RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 SIX2Q9NPC8 291 aa17■□□□□ 0.31
SMARCD1-202ENST00000394963 PPFIA1Q13136 1202 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 UBA3Q8TBC4 463 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 FAM49BQ9NUQ9 324 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 TBK1Q9UHD2 729 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 AGAP1Q9UPQ3 857 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 EXTL3O43909 919 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 DUOXA2Q1HG44 320 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 ZNF667Q5HYK9 610 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 EEF1DP3Q658K8 133 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 CYP4F22Q6NT55 531 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.99■□□□□ 0.312e-6■■■□□ 17.5
SMARCD1-202ENST00000394963 MIS12Q9H081 205 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 CSPG5O95196 566 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 PDGFRBP09619 1106 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 C6orf222P0C671 652 aaPredicted RBP16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 ZNF131P52739 623 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 BEX3Q00994 111 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 UAP1Q16222 522 aaPredicted RBP16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 COBLL1Q53SF7 1204 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 RNF187Q5TA31 235 aaPredicted RBP16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 C1orf131Q8NDD1 294 aaKnown RBP16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 FIZ1Q96SL8 496 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 L1RE1Q9UN81 338 aa16.99■□□□□ 0.31
SMARCD1-202ENST00000394963 LAMB1P07942 1786 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 RREB1Q92766 1687 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 GOLGA8MH3BSY2 632 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 OPA1O60313 960 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 ACSL3O95573 720 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 ITGB3P05106 788 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 MAPTP10636 758 aaKnown RBP16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 TUBB4BP68371 445 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 DNAJC24Q6P3W2 148 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 NIPA1Q7RTP0 329 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 RIOX2Q8IUF8 465 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 SLC17A8Q8NDX2 589 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 SYN2Q92777 582 aaPredicted RBP16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 C18orf8Q96DM3 657 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 PCDHB18PQ96TA0 734 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 SMARCAD1Q9H4L7 1026 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 KCNK9Q9NPC2 374 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 CST3P01034 146 aaPredicted RBP16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 BMT2Q1RMZ1 405 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 KCNT1Q5JUK3 1230 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 C10orf76Q5T2E6 689 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 USP38Q8NB14 1042 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 KIF12Q96FN5 646 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 GBA2Q9HCG7 927 aaPredicted RBP16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 CCDC66A2RUB6 948 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 PSMC4P43686 418 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 NUMBP49757 651 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 EPHB4P54760 987 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 ATP11AP98196 1134 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 MEI1Q5TIA1 1274 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 ERICH1Q86X53 443 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 OR6B3Q8NGW1 331 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 EPS8L1Q8TE68 723 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 FAM149B1Q96BN6 582 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 OSMRQ99650 979 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 POLIQ9UNA4 740 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 NR2E1Q9Y466 385 aa16.98■□□□□ 0.31
SMARCD1-202ENST00000394963 H3BRB1 525 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 RTN2O75298 545 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 TUBBP07437 444 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 HNRNPH3P31942 346 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 FMNL3Q8IVF7 1028 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 RHOT2Q8IXI1 618 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 DNERQ8NFT8 737 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 HSPH1Q92598 858 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 NAP1L3Q99457 506 aaPredicted RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 TUT1Q9H6E5 874 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 ERAP1Q9NZ08 941 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 MRPL42Q9Y6G3 142 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 SLC25A27O95847 323 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 TDRD10Q5VZ19 366 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 OR6B2Q6IFH4 312 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 EMC1Q8N766 993 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 PBKQ96KB5 322 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 MLXIPLQ9NP71 852 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 NGRNQ9NPE2 291 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 SNX9Q9Y5X1 595 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 COL11A2P13942 1736 aaPredicted RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 LDHAP00338 332 aaKnown RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 KRT10P13645 584 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 GNGT1P63211 74 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 BSPRYQ5W0U4 402 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 XRRA1Q6P2D8 792 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 PRUNE1Q86TP1 453 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 MCEEQ96PE7 176 aa16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 MAGED2Q9UNF1 606 aaPredicted RBP16.97■□□□□ 0.31
SMARCD1-202ENST00000394963 H0YHG0 523 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 ATP4AP20648 1035 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 TCP11Q8WWU5 503 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 MAP3K20Q9NYL2 800 aaKnown RBP16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 PLAAQ9Y263 795 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 CFHP08603 1231 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 NAMPTP43490 491 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 IFNAR2P48551 515 aa16.96■□□□□ 0.31
SMARCD1-202ENST00000394963 PDCLQ13371 301 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms