RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 BRAFP15056 766 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 GBP2P32456 591 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 STX2P32856 288 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ITGA8P53708 1063 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 E2F5Q15329 346 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MTFR1Q15390 333 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CCDC38Q502W7 563 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 SPDYAQ5MJ70 313 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 UBAP2Q5T6F2 1119 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CCDC174Q6PII3 467 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 TRIM72Q6ZMU5 477 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 RGS9BPQ6ZS82 235 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 PNMA8AQ86V59 439 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 TDRPQ86YL5 185 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MCF2L2Q86YR7 1114 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MAP4K3Q8IVH8 894 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MCOLN2Q8IZK6 566 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 C1orf54Q8WWF1 131 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 SEMA4DQ92854 862 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MIEF2Q96C03 454 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KLHL29Q96CT2 875 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 RAB3IPQ96QF0 476 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CSRNP1Q96S65 589 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 DBNDD1Q9H9R9 158 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 C17orf75Q9HAS0 396 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KCNK9Q9NPC2 374 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KCNH7Q9NS40 1196 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 RAB20Q9NX57 234 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 NINJ2Q9NZG7 142 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 SENP1Q9P0U3 644 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 AGAP1Q9UPQ3 857 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 C15orf41Q9Y2V0 281 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 NEU2Q9Y3R4 380 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 UBIAD1Q9Y5Z9 338 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ATMINO43313 823 aaPredicted RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 ADRB2P07550 413 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TAL1P17542 331 aaPredicted RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 ITGB5P18084 799 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SCP2P22307 547 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SFNP31947 248 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 ADCY8P40145 1251 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 CETN2P41208 172 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 CCNG1P51959 295 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 LACTBP83111 547 aaPredicted RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 IL9RQ01113 521 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 RASA2Q15283 850 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 FAM182BQ5T319 152 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 PCNX4Q63HM2 1172 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SMYD5Q6GMV2 418 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SLC30A10Q6XR72 485 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 LDHDQ86WU2 507 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SPICE1Q8N0Z3 855 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 RDM1Q8NG50 284 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 FBF1Q8TES7 1133 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 FBXO41Q8TF61 875 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 SPIRE2Q8WWL2 714 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 DDX27Q96GQ7 796 aaKnown RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 VCPIP1Q96JH7 1222 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TTC25Q96NG3 672 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TGS1Q96RS0 853 aaKnown RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 NTPCRQ9BSD7 190 aaKnown RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 AGO4Q9HCK5 861 aaKnown RBP10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TXLNGQ9NUQ3 528 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 EURLQ9NYK6 297 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 ANAPC7Q9UJX3 599 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TBX20Q9UMR3 447 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 CEP83Q9Y592 693 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 PCDHB2Q9Y5E7 798 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 CD2APQ9Y5K6 639 aa10.65□□□□□ -0.7
COL17A1-203ENST00000393211 TISP43B9A030 160 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 IGF2BP3O00425 579 aaKnown RBP eCLIP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 ECE2O60344 883 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 PROSCO94903 275 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 ICAM1P05362 532 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 YWHABP31946 246 aaKnown RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 CHKAP35790 457 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 ALDH5A1P51649 535 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 JAK3P52333 1124 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 CLNS1AP54105 237 aaKnown RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 PSMC5P62195 406 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 UBXN2AP68543 259 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 KLF1Q13351 362 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 KYNUQ16719 465 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 KCTD19Q17RG1 926 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 PARP6Q2NL67 630 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 LIN9Q5TKA1 542 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 DRICH1Q6PGQ1 229 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 ZNF365Q70YC5 407 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 RHOT1Q8IXI2 618 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 KATNAL2Q8IYT4 538 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 BTBD6Q96KE9 485 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 CFAP57Q96MR6 1250 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 TDRD3Q9H7E2 651 aaKnown RBP10.64□□□□□ -0.71
COL17A1-203ENST00000393211 CHST7Q9NS84 486 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 TMOD2Q9NZR1 351 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 SUFUQ9UMX1 484 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 NAALADL1Q9UQQ1 740 aa10.64□□□□□ -0.71
COL17A1-203ENST00000393211 STARD13Q9Y3M8 1113 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms