RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SOWAHDA6NJG2 315 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 OGTO15294 1046 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 CALCAP01258 141 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 HLA-DRAP01903 254 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 VPS41P49754 854 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 YWHAEP62258 255 aaKnown RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 TSPY1Q01534 308 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 BEND6Q5SZJ8 279 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 BSPRYQ5W0U4 402 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 C1orf186Q6ZWK4 172 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 ABRAQ8N0Z2 381 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 SLC30A5Q8TAD4 765 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 HPDLQ96IR7 371 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 TRIM31Q9BZY9 425 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 SEMA6BQ9H3T3 888 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 MED4Q9NPJ6 270 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 PADI3Q9ULW8 664 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 TRPV2Q9Y5S1 764 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 EIF3CLB5ME19 914 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 THP07101 528 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 SLC12A3P55017 1021 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 CASP8Q14790 479 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 WHAMMP3Q1A5X7 153 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 CYP26C1Q6V0L0 522 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 THEM5Q8N1Q8 247 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 ACRBPQ8NEB7 543 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 AFAP1L1Q8TED9 768 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 BSNDQ8WZ55 320 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 LENG9Q96B70 501 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 PANX2Q96RD6 677 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 EIF3CQ99613 913 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 HTATIP2Q9BUP3 242 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 NUP58Q9BVL2 599 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 TRPC7Q9HCX4 862 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 ENTPD7Q9NQZ7 604 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 HPSEQ9Y251 543 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 SBF2Q86WG5 1849 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 FANCGO15287 622 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 SPATA31D3P0C874 917 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 LCP1P13796 627 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 EN2P19622 333 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 EIF4A3P38919 411 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 GRIK1P39086 918 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 CLK2P49760 499 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 MAP3K10Q02779 954 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 MPZL3Q6UWV2 235 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 SPATA31D4Q6ZUB0 917 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 TMEM139Q8IV31 216 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 UBA3Q8TBC4 463 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 HSD3B7Q9H2F3 369 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 LRP5O75197 1615 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 CYP3A7-CYP3A51PA0A087WV96 503 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 RASSF10A6NK89 507 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 M0QYV0 167 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 CYP3A7P24462 503 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 TM4SF4P48230 202 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 MRPS6P82932 125 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 TBX2Q13207 712 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 DNAJC21Q5F1R6 531 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 GDF6Q6KF10 455 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 PALB2Q86YC2 1186 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 TAS1R2Q8TE23 839 aa11.01□□□□□ -0.65
COL6A3-205ENST00000392004 MAK16Q9BXY0 300 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 INTS2Q9H0H0 1204 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 DIS3Q9Y2L1 958 aaKnown RBP11.01□□□□□ -0.65
COL6A3-205ENST00000392004 LRRC53A6NM62 1247 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 CLTAP09496 248 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ARF4P18085 180 aaPredicted RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 ANXA13P27216 316 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 MTF1Q14872 753 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 PPP4R3CPQ6ZMV5 832 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 C4orf32Q8N8J7 132 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ST13P5Q8NFI4 369 aaPredicted RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 DHX38Q92620 1227 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 THAP9Q9H5L6 903 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 KIAA1586Q9HCI6 787 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 SCN7AQ01118 1682 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ATP2A1O14983 1001 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 IFNB1P01574 187 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 MYL6P60660 151 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 SEMA3FQ13275 785 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 KCNB1Q14721 858 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ARSHQ5FYA8 562 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 RUFY4Q6ZNE9 571 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 DAAM2Q86T65 1068 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 DIS3LQ8TF46 1054 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 CCDC114Q96M63 670 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 FAM204AQ9H8W3 233 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 NOC2LQ9Y3T9 749 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 ADGRG1Q9Y653 693 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 PPP1R3GB7ZBB8 358 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ENC1O14682 589 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 DYNLT1P63172 113 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 NOP14P78316 857 aaKnown RBP11□□□□□ -0.65
COL6A3-205ENST00000392004 RBP5P82980 135 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ATP11AP98196 1134 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 SURF1Q15526 300 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 FAM171A1Q5VUB5 890 aa11□□□□□ -0.65
COL6A3-205ENST00000392004 ACOT1Q86TX2 421 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms