RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SYNDIG1Q9H7V2 258 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 FBXL5Q9UKA1 691 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 USP6P35125 1406 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 TMEM94Q12767 1356 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 STXBP3O00186 592 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 FAM107AO95990 144 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 AKT1P31749 480 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 CYP2C19P33261 490 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 GPSM2P81274 684 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 SKIV2LQ15477 1246 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 OR6J1Q8NGC5 347 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 KATNAL1Q9BW62 490 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 ARHGEF38Q9NXL2 777 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 TNPO2O14787 897 aaKnown RBP13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 NDUFS3O75489 264 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 DDX42Q86XP3 938 aaKnown RBP eCLIP13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 GPR101Q96P66 508 aaPredicted RBP13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 ADAM21Q9UKJ8 722 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 RFX7Q2KHR2 1363 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 SERPINB9P50453 376 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 C1orf54Q8WWF1 131 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 CLMNQ96JQ2 1002 aa13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.46□□□□□ -0.26
CCDC88C-204ENST00000389857 SLFNL1Q499Z3 407 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 DNAL1Q4LDG9 190 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 ZNF746Q6NUN9 644 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 SNX31Q8N9S9 440 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 STKLD1Q8NE28 680 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 AGR3Q8TD06 166 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 CAB39Q9Y376 341 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 SEC24DO94855 1032 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 YWHABP31946 246 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 HPCAP84074 193 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 LRRC74AQ0VAA2 488 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 ARHGEF7Q14155 803 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 PPCSQ9HAB8 311 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 KCNJ6P48051 423 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 NCALDP61601 193 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 CLEC4FQ8N1N0 589 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 PCYOX1LQ8NBM8 494 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 RFWD2Q8NHY2 731 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 FAM162AQ96A26 154 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 CDYLQ9Y232 598 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 LARGE1O95461 756 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 HNRNPH2P55795 449 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 ADCK2Q7Z695 626 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 HORMAD1Q86X24 394 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 JPH1Q9HDC5 661 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 WDR35Q9P2L0 1181 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 NCK2O43639 380 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 TXNRD1Q16881 649 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 GSPT2Q8IYD1 628 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 LY9Q9HBG7 655 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 TADA2AO75478 443 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 ENO1P06733 434 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 CYP2D6P10635 497 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 POTEAQ6S8J7 498 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 CYFIP1Q7L576 1253 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 GUF1Q8N442 669 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 PPP1R36Q96LQ0 422 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 PRMT1Q99873 361 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 MTA3Q9BTC8 594 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 TDRD3Q9H7E2 651 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 TMEM260Q9NX78 707 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 PKP3Q9Y446 797 aa13.45□□□□□ -0.26
CCDC88C-204ENST00000389857 A0A1W2PQC6 194 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MAFGO15525 162 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SRP72O76094 671 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MYL2P10916 166 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 BTNL9Q6UXG8 535 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PTPRN2Q92932 1015 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SENP7Q9BQF6 1050 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 DDX47Q9H0S4 455 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MUC3BQ9H195 1237 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PCDHA10Q9Y5I2 948 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SLC26A4O43511 780 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 APOA4P06727 396 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 AASDHQ4L235 1098 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 BBS7Q8IWZ6 715 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 C18orf8Q96DM3 657 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 TRABDQ9H4I3 376 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SATB2Q9UPW6 733 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MRFAP1Q9Y605 127 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MYO1GB0I1T2 1018 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CACNB3P54284 484 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 LRRC14Q15048 493 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CCDC92Q53HC0 331 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CYB5R4Q7L1T6 521 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 ARHGEF26Q96DR7 871 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 AKAP10O43572 662 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 NPM3O75607 178 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 KIZQ2M2Z5 673 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 NUP93Q8N1F7 819 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PIN4Q9Y237 131 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PITPNM2Q9BZ72 1349 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PRKCBP05771 671 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PYGMP11217 842 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CDC27P30260 824 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PIGHQ14442 188 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 TBC1D10CQ8IV04 446 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms