RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CDK8P49336 464 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 CDK7P50613 346 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 KRT79Q5XKE5 535 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 USP17L2Q6R6M4 530 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 CLNKQ7Z7G1 428 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 TRIM42Q8IWZ5 723 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 POP1Q99575 1024 aaKnown RBP15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 BTBD10Q9BSF8 475 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 EMILIN3Q9NT22 766 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 WHRNQ9P202 907 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 HSFX1Q9UBD0 423 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 NUMBLQ9Y6R0 609 aa15.6■□□□□ 0.09
VPS9D1-201ENST00000389386 PALM3A6NDB9 673 aaPredicted RBP15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 MIF4GDA9UHW6 222 aaKnown RBP15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 CCDC22O60826 627 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 DESP17661 470 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 MUTP22033 750 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 ATP2B4P23634 1241 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 SCNN1DP51172 638 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 NAPAP54920 295 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 TMEM266Q2M3C6 531 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 KIAA0825Q8IV33 1275 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 DENND1AQ8TEH3 1009 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 MIS12Q9H081 205 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 ETNK2Q9NVF9 386 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 ATF5Q9Y2D1 282 aaPredicted RBP15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 SMCO2A6NFE2 343 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 CDH16O75309 829 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 LDHCP07864 332 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 CHRNB2P17787 502 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 MTDHQ86UE4 582 aaKnown RBP15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 UBL4BQ8N7F7 174 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 WDR60Q8WVS4 1066 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 CCDC97Q96F63 343 aaPredicted RBP15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 EYA3Q99504 573 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 SYT11Q9BT88 431 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 THAP2Q9H0W7 228 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 CYLDQ9NQC7 956 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 EXOC3O60645 756 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 ASLP04424 464 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 STAT1P42224 750 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 PPP4R3CPQ6ZMV5 832 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 NLRP9Q7RTR0 991 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 DGKHQ86XP1 1220 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 LZICQ8WZA0 190 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 ZSWIM1Q9BR11 485 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 EURLQ9NYK6 297 aa15.59■□□□□ 0.09
VPS9D1-201ENST00000389386 UMODL1Q5DID0 1318 aa15.58■□□□□ 0.09
VPS9D1-201ENST00000389386 C2CD2LO14523 706 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 HNRNPRO43390 633 aaKnown RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 CCDC166P0CW27 439 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 NPR1P16066 1061 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 SH3BGRP55822 239 aaPredicted RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 RHBDL3P58872 404 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 PPP4CP60510 307 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 SIX1Q15475 284 aaPredicted RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 HERC4Q5GLZ8 1057 aaPredicted RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 DAB2IPQ5VWQ8 1189 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 CEP128Q6ZU80 1094 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 CCDC65Q8IXS2 484 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 UBA5Q9GZZ9 404 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 MAF1Q9H063 256 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 C6orf50Q9HD87 102 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 BMP2KQ9NSY1 1161 aaPredicted RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 NINJ2Q9NZG7 142 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 IL1RAPL1Q9NZN1 696 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 WASF2Q9Y6W5 498 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 FAM170AA1A519 330 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 RASA4BC9J798 803 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 RASA4O43374 803 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 SLC37A4O43826 429 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 PFDN1O60925 122 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 XRCC5P13010 732 aaKnown RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 IL1R1P14778 569 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 PDK4Q16654 411 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 MARK2Q7KZI7 788 aaKnown RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 NAT14Q8WUY8 206 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 MAML1Q92585 1016 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 STMN2Q93045 179 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 RAB34Q9BZG1 259 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 DNAJC17Q9NVM6 304 aaKnown RBP15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 TAS2R14Q9NYV8 317 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 CIDEBQ9UHD4 219 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 GRID1Q9ULK0 1009 aa15.58■□□□□ 0.08
VPS9D1-201ENST00000389386 KLRF2D3W0D1 207 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 THAP12O43422 761 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 SPAG7O75391 227 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 ZWINTO95229 277 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 PABPC4LP0CB38 370 aaKnown RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 PYGMP11217 842 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 GNA11P29992 359 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 TMEM62Q0P6H9 643 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 SPARCL1Q14515 664 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 PTCD3Q96EY7 689 aaKnown RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 CEP95Q96GE4 821 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 MASTLQ96GX5 879 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 OLFM3Q96PB7 478 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 KCNQ5Q9NR82 932 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 RHBDL2Q9NX52 303 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 PPP1R1BQ9UD71 204 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms