RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 ALG13Q9NP73 1137 aaKnown RBP13.45□□□□□ -0.26
VRK3-202ENST00000377011 BLOC1S4Q9NUP1 217 aa13.45□□□□□ -0.26
VRK3-202ENST00000377011 TYW1Q9NV66 732 aaKnown RBP13.45□□□□□ -0.26
VRK3-202ENST00000377011 EXOC1Q9NV70 894 aa13.45□□□□□ -0.26
VRK3-202ENST00000377011 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.45□□□□□ -0.26
VRK3-202ENST00000377011 STK17AQ9UEE5 414 aa13.45□□□□□ -0.26
VRK3-202ENST00000377011 HES2Q9Y543 173 aa13.45□□□□□ -0.26
VRK3-202ENST00000377011 CUL9Q8IWT3 2517 aa13.45□□□□□ -0.26
VRK3-202ENST00000377011 TTC26A0AVF1 554 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 INO80B-WBP1J3KQ70 363 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 SASH3O75995 380 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 SEC31AO94979 1220 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 EYA4O95677 639 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 CTNNB1P35222 781 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 CYLC1P35663 651 aaPredicted RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 SMC1AQ14683 1233 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 ARSHQ5FYA8 562 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 RINT1Q6NUQ1 792 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 CNNM4Q6P4Q7 775 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 C1orf186Q6ZWK4 172 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 HELQQ8TDG4 1101 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 CCDC43Q96MW1 224 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 TRIM9Q9C026 710 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 INO80BQ9C086 356 aaPredicted RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 TTYH3Q9C0H2 523 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 ANKZF1Q9H8Y5 726 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 C1orf112Q9NSG2 853 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 ZNHIT6Q9NWK9 470 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 TMEM161AQ9NX61 479 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 PSD3Q9NYI0 1048 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 LRFN2Q9ULH4 789 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 LRRIQ4A6NIV6 560 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 ARF4P18085 180 aaPredicted RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 PLCG1P19174 1290 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 BMPR1AP36894 532 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 SLC12A3P55017 1021 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 ZBED6P86452 979 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 TWF2Q6IBS0 349 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 AGMOQ6ZNB7 445 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 HDXQ7Z353 690 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 IFNLR1Q8IU57 520 aaPredicted RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 CMTR2Q8IYT2 770 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 CSGALNACT2Q8N6G5 542 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 SMG8Q8ND04 991 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 ERGIC2Q96RQ1 377 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 DUSP9Q99956 384 aaKnown RBP13.44□□□□□ -0.26
VRK3-202ENST00000377011 LRRC27Q9C0I9 530 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 FAM105AQ9NUU6 356 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 MYO6Q9UM54 1294 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 TTC28Q96AY4 2481 aa13.44□□□□□ -0.26
VRK3-202ENST00000377011 PVALEFA0A1B0GWK0 134 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 ANO9A1A5B4 782 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 EIF3CLB5ME19 914 aaKnown RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 H3BNC9 293 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 RNF225M0QZC1 329 aaPredicted RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 ASAP2O43150 1006 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 GAS2O43903 313 aaKnown RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 HIP1RO75146 1068 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 FGFR1OPO95684 399 aaKnown RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 IRS1P35568 1242 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 GPM6BQ13491 265 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 MXD4Q14582 209 aaPredicted RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 CDCA2Q69YH5 1023 aaPredicted RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 WDR93Q6P2C0 686 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 TAS1R3Q7RTX0 852 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 TRAPPC11Q7Z392 1133 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 CALML4Q96GE6 196 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 EIF3CQ99613 913 aaKnown RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 TUBGCP2Q9BSJ2 902 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 TSGA10Q9BZW7 698 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 REXO2Q9Y3B8 237 aaKnown RBP13.43□□□□□ -0.26
VRK3-202ENST00000377011 PCDHB2Q9Y5E7 798 aa13.43□□□□□ -0.26
VRK3-202ENST00000377011 TRIM49BA6NDI0 452 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 SLC26A4O43511 780 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 KRT86O43790 486 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 IPO7O95373 1038 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 SSBP05455 408 aaKnown RBP eCLIP13.42□□□□□ -0.26
VRK3-202ENST00000377011 ITGB1P05556 798 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 STAG3L1P0CL83 205 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 POU3F3P20264 500 aaPredicted RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 MUTP22033 750 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 OAS2P29728 719 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 PMS1P54277 932 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 CKAP4Q07065 602 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 BEND6Q5SZJ8 279 aaPredicted RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 PAPD7Q5XG87 772 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 EEF1DP3Q658K8 133 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 TMEM173Q86WV6 379 aaPredicted RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 KLHL23Q8NBE8 558 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 MCPH1Q8NEM0 835 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 RAB34Q9BZG1 259 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 CCDC113Q9H0I3 377 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 ELAC1Q9H777 363 aaKnown RBP13.42□□□□□ -0.26
VRK3-202ENST00000377011 CHST12Q9NRB3 414 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 ST7Q9NRC1 585 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 MIOSQ9NXC5 875 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 DNM3Q9UQ16 869 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 MYH11P35749 1972 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 A0A0U1RQJ8 604 aa13.42□□□□□ -0.26
VRK3-202ENST00000377011 NT5C1B-RDH14C9J2C7 533 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms