RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 USP17L5A8MUK1 530 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 KRT76Q01546 638 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 KDSRQ06136 332 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 TRIM69Q86WT6 500 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 DIS3LQ8TF46 1054 aaKnown RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 UGGT1Q9NYU2 1555 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CPB1P15086 417 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 ORC2Q13416 577 aaPredicted RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 KIF12Q96FN5 646 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 LXNQ9BS40 222 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 LRRIQ3A6PVS8 624 aaPredicted RBP13.11□□□□□ -0.31
VPS13A-204ENST00000376634 SLC16A4O15374 487 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CDC27P30260 824 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 RAD54LQ92698 747 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 HES6Q96HZ4 224 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 MUC3BQ9H195 1237 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 ADGRA2Q96PE1 1338 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 TRPM1Q7Z4N2 1603 aa13.11□□□□□ -0.31
VPS13A-204ENST00000376634 CLASP2O75122 1294 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 APRTP07741 180 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 PCYOX1LQ8NBM8 494 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 SPATA16Q9BXB7 569 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 PTPRKQ15262 1439 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 CYTH3O43739 400 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 FAM107AO95990 144 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 SYDE1Q6ZW31 735 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 CHMP1BQ7LBR1 199 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 FTLP02792 175 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 RFX8Q6ZV50 586 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 JPH1Q9HDC5 661 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NPHS2Q9NP85 383 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 KCNH4Q9UQ05 1017 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NLRP1Q9C000 1473 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 TRAPPC3O43617 180 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 COBLL1Q53SF7 1204 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ZNF772Q68DY9 489 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 SFR1Q86XK3 245 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 APOBEC3FQ8IUX4 373 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ARHGEF38Q9NXL2 777 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NDUFS3O75489 264 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NLRP14Q86W24 1093 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 PRMT1Q99873 361 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ZNF513Q8N8E2 541 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 BRD8Q9H0E9 1235 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 KLC4Q9NSK0 619 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ZSWIM5Q9P217 1185 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 HIST1H2AGP0C0S8 130 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 HIST1H2ADP20671 130 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 IRX1P78414 480 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 OLFML2BQ68BL8 750 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NSUN6Q8TEA1 469 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 RNF25Q96BH1 459 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 HIST1H2AHQ96KK5 128 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 HIST1H2AJQ99878 128 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 H2AFJQ9BTM1 129 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ST13P50502 369 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 EIF3EP60228 445 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 NCAPHQ15003 741 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ZHX2Q9Y6X8 837 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 AATKQ6ZMQ8 1374 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 POTEFA5A3E0 1075 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 MOCS2O96007 188 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 CYP21A2P08686 494 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 POTEIP0CG38 1075 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 TWF1Q12792 350 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 DRAP1Q14919 205 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 UGP2Q16851 508 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 POTEGQ6S5H5 508 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 POTEEQ6S8J3 1075 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 ZNF579Q8NAF0 562 aaKnown RBP13.1□□□□□ -0.31
VPS13A-204ENST00000376634 CMTM5Q96DZ9 223 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 TRABDQ9H4I3 376 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 HPS4Q9NQG7 708 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 DTNAQ9Y4J8 743 aa13.1□□□□□ -0.31
VPS13A-204ENST00000376634 CCDC88AQ3V6T2 1871 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 FGFR4P22455 802 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 KRT17Q04695 432 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 SPATA2LQ8IUW3 424 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 TTLL6Q8N841 843 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PTPRN2Q92932 1015 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 TLR7Q9NYK1 1049 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 TNPO2O14787 897 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 FCER1AP12319 257 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 KIZQ2M2Z5 673 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ANKRD49Q8WVL7 239 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 TNIP3Q96KP6 325 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 DCDC2Q9UHG0 476 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 RNF123Q5XPI4 1314 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 BRAFP15056 766 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 COPB2P35606 906 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 CLK1P49759 484 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PRUNE1Q86TP1 453 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 C19orf60Q96EN9 201 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 TSEN34Q9BSV6 310 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ADAM21Q9UKJ8 722 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 RCOR1Q9UKL0 485 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PRKAB2O43741 272 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 MLNP12872 115 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ST8SIA6P61647 398 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms