RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TNFRSF8P28908 595 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 RNASE9P60153 205 aaKnown RBP16.74■□□□□ 0.27
CCDC40-202ENST00000374876 IGBP1P78318 339 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 CETN1Q12798 172 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 EMBQ6PCB8 327 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 GOLGA6L1Q8N7Z2 621 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TPCN2Q8NHX9 752 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 ZBTB10Q96DT7 871 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 PBKQ96KB5 322 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 PCIF1Q9H4Z3 704 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TRIP12Q14669 1992 aaPredicted RBP16.74■□□□□ 0.27
CCDC40-202ENST00000374876 C17orf102A2RUQ5 167 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TRIM43BA6NCK2 446 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 CLTBP09497 229 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 CYP2C9P11712 490 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 INSRRP14616 1297 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 RFX1P22670 979 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 GGCXP38435 758 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 SESTD1Q86VW0 696 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 GLYCTKQ8IVS8 523 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 SYCE1Q8N0S2 351 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 USP38Q8NB14 1042 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 RDM1Q8NG50 284 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TRAPPC12Q8WVT3 735 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TRIM43Q96BQ3 446 aaPredicted RBP16.74■□□□□ 0.27
CCDC40-202ENST00000374876 KRT12Q99456 494 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TIPINQ9BVW5 301 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 GOLPH3Q9H4A6 298 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 TMEM39AQ9NV64 488 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 WDR81Q562E7 1941 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 MYH9P35579 1960 aaKnown RBP16.73■□□□□ 0.27
CCDC40-202ENST00000374876 TLR3O15455 904 aaKnown RBP16.73■□□□□ 0.27
CCDC40-202ENST00000374876 TREHO43280 583 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 GALCP54803 685 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 PSMC5P62195 406 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 TNNC1P63316 161 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 PTPN11Q06124 597 aaPredicted RBP16.73■□□□□ 0.27
CCDC40-202ENST00000374876 ARHGAP44Q17R89 818 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 PEX26Q7Z412 305 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 HAUS6Q7Z4H7 955 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 C4orf19Q8IY42 314 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 SLC30A5Q8TAD4 765 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 LNX1Q8TBB1 728 aaPredicted RBP16.73■□□□□ 0.27
CCDC40-202ENST00000374876 SH2D3AQ9BRG2 576 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 SEZ6LQ9BYH1 1024 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 GPR88Q9GZN0 384 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 FAM204AQ9H8W3 233 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 PDLIM7Q9NR12 457 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 NOD1Q9Y239 953 aa16.73■□□□□ 0.27
CCDC40-202ENST00000374876 TMEM150BA6NC51 233 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 TMCO5BA8MYB1 307 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 TISP43B9A030 160 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 HEXIM1O94992 359 aaKnown RBP16.72■□□□□ 0.27
CCDC40-202ENST00000374876 SLC26A2P50443 739 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 VAMP7P51809 220 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PPFIA1Q13136 1202 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 DAAM2Q86T65 1068 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 C12orf56Q8IXR9 622 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 XXYLT1Q8NBI6 393 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 TMEM174Q8WUU8 243 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 ATP6V0A1Q93050 837 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 CBWD1Q9BRT8 395 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 NR2E3Q9Y5X4 410 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 IGSF9BQ9UPX0 1349 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PDE4DIPQ5VU43 2346 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 KAT6AQ92794 2004 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 CEP104O60308 925 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 GLI1P08151 1106 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 ITGB8P26012 769 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 NPEPPSP55786 919 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PEX3P56589 373 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 DLG4P78352 724 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 GTF2BQ00403 316 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PRKCEQ02156 737 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 GUCY2DQ02846 1103 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 GRIK4Q16099 956 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PTPROQ16827 1216 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 XKR9Q5GH70 373 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 PHLDB3Q6NSJ2 640 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 ATP8B4Q8TF62 1192 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 EPB41L5Q9HCM4 733 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 HSPBP1Q9NZL4 362 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 NRCAMQ92823 1304 aa16.72■□□□□ 0.27
CCDC40-202ENST00000374876 TNFAIP3P21580 790 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 SNRPFP62306 86 aaKnown RBP16.71■□□□□ 0.27
CCDC40-202ENST00000374876 MARCH8Q5T0T0 291 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 FAM102BQ5T8I3 360 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 SLFN11Q7Z7L1 901 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 SLC17A8Q8NDX2 589 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 ACTRT1Q8TDG2 376 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 BBXQ8WY36 941 aaPredicted RBP16.71■□□□□ 0.27
CCDC40-202ENST00000374876 CTNNBL1Q8WYA6 563 aaPredicted RBP16.71■□□□□ 0.27
CCDC40-202ENST00000374876 RIN2Q8WYP3 895 aaPredicted RBP16.71■□□□□ 0.27
CCDC40-202ENST00000374876 CAVIN3Q969G5 261 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 PPP1R12CQ9BZL4 782 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 ST6GALNAC4Q9H4F1 302 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 GDF3Q9NR23 364 aa16.71■□□□□ 0.27
CCDC40-202ENST00000374876 SEPT11Q9NVA2 429 aaKnown RBP16.71■□□□□ 0.27
CCDC40-202ENST00000374876 SLC16A4O15374 487 aa16.7■□□□□ 0.26
CCDC40-202ENST00000374876 P4HA2O15460 535 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms