RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 MYH15Q9Y2K3 1946 aa5.64□□□□□ -1.51
USP48-202ENST00000374730 OPA1O60313 960 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 RFPL3O75679 317 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 MAP4K4O95819 1239 aaPredicted RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 C6P13671 934 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 MYL6BP14649 208 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 KIF11P52732 1056 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 HGFACQ04756 655 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 AIMP1Q12904 312 aaKnown RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 EPHA10Q5JZY3 1008 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 CWC27Q6UX04 472 aaKnown RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 GAS2L3Q86XJ1 694 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 TICAM2Q86XR7 235 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 PLBD2Q8NHP8 589 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 PLA2G12BQ9BX93 195 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 PANK2Q9BZ23 570 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 UPF3BQ9BZI7 483 aaKnown RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 ZSWIM4Q9H7M6 989 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 CABP5Q9NP86 173 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 TNPO3Q9Y5L0 923 aaKnown RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 USP16Q9Y5T5 823 aa5.63□□□□□ -1.51
USP48-202ENST00000374730 WDR33Q9C0J8 1336 aaKnown RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 CICQ96RK0 1608 aaPredicted RBP5.63□□□□□ -1.51
USP48-202ENST00000374730 KRT37O76014 449 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 PRLP01236 227 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ATP5JP18859 108 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 FLT3P36888 993 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 AK2P54819 239 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 SESN2P58004 480 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 ROM1Q03395 351 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 NOLC1Q14978 699 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP48-202ENST00000374730 NECTIN1Q15223 517 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ZSCAN23Q3MJ62 389 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 VPS53Q5VIR6 699 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 BCL6BQ8N143 479 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 ZCRB1Q8TBF4 217 aaKnown RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 ERCC4Q92889 916 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 MAP4K1Q92918 833 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 LPPQ93052 612 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 FAM89AQ96GI7 184 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ZSCAN31Q96LW9 406 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 OR14A2Q96R54 314 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ADOQ96SZ5 270 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ZNF747Q9BV97 191 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 VPS11Q9H270 941 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ALDH8A1Q9H2A2 487 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 C12orf65Q9H3J6 166 aaKnown RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 NELFAQ9H3P2 528 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 PCIF1Q9H4Z3 704 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 GPR108Q9NPR9 543 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 PRDM11Q9NQV5 511 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 HMG20BQ9P0W2 317 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 SRRDQ9UH36 339 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 LIMCH1Q9UPQ0 1083 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 DDX60Q8IY21 1712 aaKnown RBP5.62□□□□□ -1.51
USP48-202ENST00000374730 ARAP2Q8WZ64 1704 aa5.62□□□□□ -1.51
USP48-202ENST00000374730 PTPDC1A2A3K4 754 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 DISP2A7MBM2 1401 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 H7C1D1 291 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 TRAF5O00463 557 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 DVL2O14641 736 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 ZNF609O15014 1411 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 AKAP8O43823 692 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CYP17A1P05093 508 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 IL2RBP14784 551 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 ZKSCAN1P17029 563 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CASTP20810 708 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 STAT5BP51692 787 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 NUP98P52948 1817 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 PTH1RQ03431 593 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 COL16A1Q07092 1604 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CCDC173Q0VFZ6 552 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 ZNF460Q14592 562 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 AHDC1Q5TGY3 1603 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CREB3L3Q68CJ9 461 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 MAMDC4Q6UXC1 1216 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 SRCAPQ6ZRS2 3230 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 TOM1L2Q6ZVM7 507 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 RUFY3Q7L099 469 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 UBE3BQ7Z3V4 1068 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 GPT2Q8TD30 523 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 PALLDQ8WX93 1383 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 RREB1Q92766 1687 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 JAKMIP1Q96N16 626 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 PPP1R9BQ96SB3 815 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 ORAI3Q9BRQ5 295 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 FSD1Q9BTV5 496 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 BRINP2Q9C0B6 783 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 CCDC8Q9H0W5 538 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 KANSL2Q9H9L4 492 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 INTS7Q9NVH2 962 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CWC25Q9NXE8 425 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 B4GALT6Q9UBX8 382 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 DBNLQ9UJU6 430 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CTDP1Q9Y5B0 961 aaPredicted RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 RBM8AQ9Y5S9 174 aaKnown RBP5.61□□□□□ -1.51
USP48-202ENST00000374730 CYP46A1Q9Y6A2 500 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 FPGT-TNNI3KV9GXZ4 949 aa5.61□□□□□ -1.51
USP48-202ENST00000374730 LAMB2P55268 1798 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms