RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 GJB7Q6PEY0 223 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 CCDC174Q6PII3 467 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 OTOAQ7RTW8 1153 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 ZNF554Q86TJ5 538 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 ZNF398Q8TD17 642 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 SLC35B4Q969S0 331 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 NSL1Q96IY1 281 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 NUDT12Q9BQG2 462 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 LZTS2Q9BRK4 669 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 PCDH18Q9HCL0 1135 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 EURLQ9NYK6 297 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 NINJ2Q9NZG7 142 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 MTUS1Q9ULD2 1270 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 PAIP2BQ9ULR5 123 aaKnown RBP13.72□□□□□ -0.21
PRPF4-201ENST00000374198 KIF13BQ9NQT8 1826 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 USP17L12C9JPN9 530 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 USP17L21D6R901 530 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 OPHN1O60890 802 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 ITIH2P19823 946 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 STAT1P42224 750 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 GRIA2P42262 883 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 BCAMP50895 628 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 PLOD1Q02809 727 aaPredicted RBP13.72□□□□□ -0.21
PRPF4-201ENST00000374198 EVX2Q03828 476 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 SLC35G1Q2M3R5 365 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 EDRF1Q3B7T1 1238 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 TMEM119Q4V9L6 283 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 RBM26Q5T8P6 1007 aaKnown RBP13.72□□□□□ -0.21
PRPF4-201ENST00000374198 SEL1L2Q5TEA6 688 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 FRMD5Q7Z6J6 570 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 SNX29Q8TEQ0 813 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 SCFD1Q8WVM8 642 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 MAML1Q92585 1016 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 MTMR9Q96QG7 549 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 ZSWIM1Q9BR11 485 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 THAP2Q9H0W7 228 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 NPHS2Q9NP85 383 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 PTTG2Q9NZH5 202 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 NDUFA13Q9P0J0 144 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 TUBGCP4Q9UGJ1 667 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 PCDHA2Q9Y5H9 948 aa13.72□□□□□ -0.21
PRPF4-201ENST00000374198 CFAP69A5D8W1 941 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 TULP1O00294 542 aaPredicted RBP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 HAUS5O94927 633 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 ANPEPP15144 967 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 AMPD1P23109 780 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 NR2F2P24468 414 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 TMED2Q15363 201 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 PLEKHG4Q58EX7 1191 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 FYB2Q5VWT5 728 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 TBC1D9BQ66K14 1250 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 RINLQ6ZS11 566 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 ACAD11Q709F0 780 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 SMYD1Q8NB12 490 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 ABTB1Q969K4 478 aaPredicted RBP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 CCDC77Q9BR77 488 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 CLIC5Q9NZA1 410 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 SH3GLB1Q9Y371 365 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 BTBD19C9JJ37 291 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 PRPF4O43172 522 aaKnown RBP eCLIP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 VIL1P09327 827 aaKnown RBP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 RGS2P41220 211 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 DYNLL1P63167 89 aaKnown RBP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 CDC16Q13042 620 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 ITGA9Q13797 1035 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 RASA3Q14644 834 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 KRT79Q5XKE5 535 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 PPP4R3CPQ6ZMV5 832 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 SATL1Q86VE3 508 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 LRRC43Q8N309 656 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 NLGN2Q8NFZ4 835 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 TBCKQ8TEA7 893 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 DNAJC1Q96KC8 554 aaKnown RBP13.71□□□□□ -0.21
PRPF4-201ENST00000374198 EPB41L1Q9H4G0 881 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 EMILIN3Q9NT22 766 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 TAS2R1Q9NYW7 299 aa13.71□□□□□ -0.21
PRPF4-201ENST00000374198 POTEMA6NI47 508 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 CYTH3O43739 400 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 PYGMP11217 842 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 PIM1P11309 404 aaPredicted RBP13.71□□□□□ -0.22
PRPF4-201ENST00000374198 SLC18A1P54219 525 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 ADARP55265 1226 aaKnown RBP13.71□□□□□ -0.22
PRPF4-201ENST00000374198 ORC2Q13416 577 aaPredicted RBP13.71□□□□□ -0.22
PRPF4-201ENST00000374198 STAT4Q14765 748 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 SIX1Q15475 284 aaPredicted RBP13.71□□□□□ -0.22
PRPF4-201ENST00000374198 CALCRLQ16602 461 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 TRABD2AQ86V40 505 aa13.71□□□□□ -0.22
PRPF4-201ENST00000374198 DGCR14Q96DF8 476 aaKnown RBP13.71□□□□□ -0.22
PRPF4-201ENST00000374198 FAM170AA1A519 330 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SUPT3HO75486 399 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 OR6B1O95007 311 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 XRCC5P13010 732 aaKnown RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 KRT17Q04695 432 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 C11orf63Q6NUN7 778 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SLC13A5Q86YT5 568 aaPredicted RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 C12orf50Q8NA57 414 aaPredicted RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 BMP2KQ9NSY1 1161 aaPredicted RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 KANSL3Q9P2N6 904 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 ASIC3Q9UHC3 531 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms