RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MAGEB18Q96M61 343 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 LGALS13Q9UHV8 139 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 UBR3Q6ZT12 1888 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 GRIN3BO60391 1043 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 SORBS3O60504 671 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 TOM1O60784 492 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 NEBLO76041 1014 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 PDE6BP35913 854 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 MTFR1Q15390 333 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 PAIP2Q9BPZ3 127 aaKnown RBP17.46■□□□□ 0.39
SDC4-201ENST00000372733 PLCD4Q9BRC7 762 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 TRAIPQ9BWF2 469 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 KRT5P13647 590 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 ITGB5P18084 799 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 RARRES1P49788 294 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 LACTBP83111 547 aaPredicted RBP17.46■□□□□ 0.39
SDC4-201ENST00000372733 ALCAMQ13740 583 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 SNRNP35Q16560 246 aaKnown RBP17.46■□□□□ 0.39
SDC4-201ENST00000372733 CLEC16AQ2KHT3 1053 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 CYP4F22Q6NT55 531 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 ARHGEF18Q6ZSZ5 1173 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 KCNV2Q8TDN2 545 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 TRIM6Q9C030 488 aaPredicted RBP17.46■□□□□ 0.39
SDC4-201ENST00000372733 TDRD3Q9H7E2 651 aaKnown RBP17.46■□□□□ 0.39
SDC4-201ENST00000372733 ZHX2Q9Y6X8 837 aa17.46■□□□□ 0.39
SDC4-201ENST00000372733 MROH7Q68CQ1 1323 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 CDH16O75309 829 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 TCEA3O75764 348 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 CCNB1P14635 433 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 PEX3P56589 373 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 STRN3Q13033 797 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 MKRN3Q13064 507 aaKnown RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 RNF43Q68DV7 783 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 EP400NLQ6ZTU2 488 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 SPOCK2Q92563 424 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 UTP4Q969X6 686 aaKnown RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 KIFC3Q9BVG8 833 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 ETNK1Q9HBU6 452 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 SLC24A3Q9HC58 644 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 ATRNL1Q5VV63 1379 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 RALAP11233 206 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 WDR4P57081 412 aaKnown RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 ZYXQ15942 572 aaKnown RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 KRT39Q6A163 491 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 SYDE1Q6ZW31 735 aaPredicted RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 GRK7Q8WTQ7 553 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 DDX27Q96GQ7 796 aaKnown RBP17.45■□□□□ 0.38
SDC4-201ENST00000372733 NT5C1BQ96P26 610 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 EHMT1Q9H9B1 1298 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 ARHGEF10LQ9HCE6 1279 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 SLC5A4Q9NY91 659 aa17.45■□□□□ 0.38
SDC4-201ENST00000372733 RASA4BC9J798 803 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 RASA4O43374 803 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 SPAG7O75391 227 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 UNC5CO95185 931 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 ADSSP30520 456 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 MAN1A1P33908 653 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 IZUMO3Q5VZ72 239 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 IL31RAQ8NI17 732 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 PI4K2AQ9BTU6 479 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 MYLK2Q9H1R3 596 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.44■□□□□ 0.38
SDC4-201ENST00000372733 USP20Q9Y2K6 914 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 SLX4Q8IY92 1834 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 GSTTP1A0A1W2PQM5 241 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 MAPTP10636 758 aaKnown RBP17.44■□□□□ 0.38
SDC4-201ENST00000372733 GJC1P36383 396 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 ATP11AP98196 1134 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 GTF2BQ00403 316 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 CAV1Q03135 178 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 SPP2Q13103 211 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 CPA5Q8WXQ8 436 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 CSRNP1Q96S65 589 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 RIT2Q99578 217 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 MXRA8Q9BRK3 442 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 PITPNM3Q9BZ71 974 aa17.44■□□□□ 0.38
SDC4-201ENST00000372733 DNAJC3Q13217 504 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 PPP1R21Q6ZMI0 780 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 PAXIP1Q6ZW49 1069 aaPredicted RBP17.43■□□□□ 0.38
SDC4-201ENST00000372733 ZNF365Q70YC5 407 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 ATL2Q8NHH9 583 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 FBF1Q8TES7 1133 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 ERP27Q96DN0 273 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 TMEM237Q96Q45 408 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 EURLQ9NYK6 297 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 NEU2Q9Y3R4 380 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 GOLGB1Q14789 3259 aaKnown RBP17.43■□□□□ 0.38
SDC4-201ENST00000372733 EP400Q96L91 3159 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 MAPK13O15264 365 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 PMM2O15305 246 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 P4HBP07237 508 aaKnown RBP17.43■□□□□ 0.38
SDC4-201ENST00000372733 ATP2A2P16615 1042 aaKnown RBP17.43■□□□□ 0.38
SDC4-201ENST00000372733 GPC3P51654 580 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 ANKRD20A2Q5SQ80 823 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 ANKRD20A1Q5TYW2 823 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 ANKRD20A3Q5VUR7 823 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 PARD3BQ8TEW8 1205 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 TMEM174Q8WUU8 243 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 KIFAP3Q92845 792 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 RANBP17Q9H2T7 1088 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms