RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 POLD4Q9HCU8 107 aa11.41□□□□□ -0.58
CLRN3-201ENST00000368671 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLRN3-201ENST00000368671 FBXW11Q9UKB1 542 aa11.41□□□□□ -0.58
CLRN3-201ENST00000368671 POLIQ9UNA4 740 aa11.41□□□□□ -0.58
CLRN3-201ENST00000368671 GDAQ9Y2T3 454 aa11.41□□□□□ -0.58
CLRN3-201ENST00000368671 C3orf80F5H4A9 247 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 ACKR2O00590 384 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 CCL16O15467 120 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 C1RP00736 705 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 C8AP07357 584 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 CYP11B2P19099 503 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 RPA1P27694 616 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 CCT6AP40227 531 aaKnown RBP11.4□□□□□ -0.58
CLRN3-201ENST00000368671 NTHL1P78549 312 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 GNL2Q13823 731 aaKnown RBP11.4□□□□□ -0.58
CLRN3-201ENST00000368671 GLRA4Q5JXX5 417 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 SPECC1Q5M775 1068 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 TTC38Q5R3I4 469 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 HAUS3Q68CZ6 603 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 PIK3R5Q8WYR1 880 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 NXPE3Q969Y0 559 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 CLSTN3Q9BQT9 956 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 TBC1D17Q9HA65 648 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 NUMBLQ9Y6R0 609 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 VWA8A3KMH1 1905 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 MYH15Q9Y2K3 1946 aa11.4□□□□□ -0.58
CLRN3-201ENST00000368671 TRIOO75962 3097 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 TULP1O00294 542 aaPredicted RBP11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ADAM12O43184 909 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 PAPLNO95428 1278 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ELAVL2Q12926 359 aaKnown RBP11.39□□□□□ -0.59
CLRN3-201ENST00000368671 HTR4Q13639 388 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 PPP2R5AQ15172 486 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 NAB2Q15742 525 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ECM1Q16610 540 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 DCAF4L1Q3SXM0 396 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ADSSL1Q8N142 457 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 KCTD12Q96CX2 325 aaKnown RBP11.39□□□□□ -0.59
CLRN3-201ENST00000368671 SNX27Q96L92 541 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 IFT74Q96LB3 600 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ARHGEF3Q9NR81 526 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 PPP4R2Q9NY27 417 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 DOCK8Q8NF50 2099 aa11.39□□□□□ -0.59
CLRN3-201ENST00000368671 ANHXE9PGG2 379 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 DCNP07585 359 aaKnown RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 HNRNPA1P09651 372 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 IGFBP6P24592 240 aaPredicted RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 CLCNKBP51801 687 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 ORC2Q13416 577 aaPredicted RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 NT5DC1Q5TFE4 455 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 ATF7IP2Q5U623 682 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 PDXDC1Q6P996 788 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 DCLRE1AQ6PJP8 1040 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 PARM1Q6UWI2 310 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 FAM184AQ8NB25 1140 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 SLC7A14Q8TBB6 771 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 FGF14Q92915 247 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 TATDN2Q93075 761 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 ZFRQ96KR1 1074 aaKnown RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 RPP25Q9BUL9 199 aaKnown RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 BHMT2Q9H2M3 363 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 FOXP1Q9H334 677 aaPredicted RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 GOLGA2P5Q9HBQ8 144 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 CDH7Q9ULB5 785 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 NOL7Q9UMY1 257 aaKnown RBP11.38□□□□□ -0.59
CLRN3-201ENST00000368671 LIMCH1Q9UPQ0 1083 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 KIAA1024Q9UPX6 916 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 COL4A3Q01955 1670 aa11.38□□□□□ -0.59
CLRN3-201ENST00000368671 CCDC169A6NNP5 214 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 I3L4J1 428 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 K7ERI5 159 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 EIF5BO60841 1220 aaKnown RBP11.37□□□□□ -0.59
CLRN3-201ENST00000368671 XYLBO75191 536 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 B3GAT3O94766 335 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 MUTP22033 750 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 OR1D2P34982 312 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 BRCC3P46736 316 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 EFNA5P52803 228 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 OSTNP61366 133 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 GPC5P78333 572 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 AXDND1Q5T1B0 1012 aaPredicted RBP11.37□□□□□ -0.59
CLRN3-201ENST00000368671 THSD4Q6ZMP0 1018 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 CEP120Q8N960 986 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 ITFG1Q8TB96 612 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 KCNG4Q8TDN1 519 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 SNX29Q8TEQ0 813 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 KIFAP3Q92845 792 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 FGF13Q92913 245 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 WNT2BQ93097 391 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 PPP1R10Q96QC0 940 aaKnown RBP11.37□□□□□ -0.59
CLRN3-201ENST00000368671 LLPHQ9BRT6 129 aaKnown RBP11.37□□□□□ -0.59
CLRN3-201ENST00000368671 SLC2A4RGQ9NR83 387 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 DDX19AQ9NUU7 478 aaKnown RBP11.37□□□□□ -0.59
CLRN3-201ENST00000368671 HCFC1R1Q9NWW0 138 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 MTRRQ9UBK8 725 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 LRWD1Q9UFC0 647 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 SIT1Q9Y3P8 196 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 CDY1Q9Y6F8 540 aa11.37□□□□□ -0.59
CLRN3-201ENST00000368671 ZFP37Q9Y6Q3 630 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms