RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CCT5P48643 541 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 SIX1Q15475 284 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 SPDYCQ5MJ68 293 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 TREML2Q5T2D2 321 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 CCDC137Q6PK04 289 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 LBX2Q6XYB7 198 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 MCOLN2Q8IZK6 566 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 GRHL1Q9NZI5 618 aa22.3■■□□□ 1.16
CCDC88B-203ENST00000359902 UTRNP46939 3433 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 PODXLO00592 558 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 RARAP10276 462 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ALDH5A1P51649 535 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 PLTPP55058 493 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 BIRC3Q13489 604 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 SLFN12LQ6IEE8 588 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 SPOPLQ6IQ16 392 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ZNF677Q86XU0 584 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 SLC7A3Q8WY07 619 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 PCYT2Q99447 389 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 TARS2Q9BW92 718 aaKnown RBP22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 GSTTP1A0A1W2PQM5 241 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ZEB2O60315 1214 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ERLIN2O94905 339 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 PIK3CAP42336 1068 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ZBTB41Q5SVQ8 909 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 CPA5Q8WXQ8 436 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 BBXQ8WY36 941 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 BTBD7Q9P203 1132 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 MTUS1Q9ULD2 1270 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 SNCAIPQ9Y6H5 919 aa22.29■■□□□ 1.16
CCDC88B-203ENST00000359902 ACO1P21399 889 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 UBA1P22314 1058 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 LSP1P33241 339 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 COILP38432 576 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 MDH1P40925 334 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 BPIFB4P59827 614 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 FBXO25Q8TCJ0 367 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 AVENQ9NQS1 362 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 RBAKQ9NYW8 714 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 FBXO40Q9UH90 709 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 ANAPC7Q9UJX3 599 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 A0A0B4J269 797 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 EDN1P05305 212 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 MAPK4P31152 587 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 HPDP32754 393 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 RPL21P46778 160 aaKnown RBP22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 VGLL4Q14135 290 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 AGBL2Q5U5Z8 902 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 TRIM7Q9C029 511 aa22.28■■□□□ 1.16
CCDC88B-203ENST00000359902 WDR90Q96KV7 1748 aa22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 FARP2O94887 1054 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 TARBP2Q15633 366 aaKnown RBP22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 MSTO1Q9BUK6 570 aa22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 EPB41L4BQ9H329 900 aa22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 APOBEC3GQ9HC16 384 aaKnown RBP22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 LRRC4CQ9HCJ2 640 aa22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 MROH7Q68CQ1 1323 aa22.27■■□□□ 1.16
CCDC88B-203ENST00000359902 LDHAP00338 332 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 CYP1A1P04798 512 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 RRM1P23921 792 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 DLK2Q6UY11 383 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 RIOX2Q8IUF8 465 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 SGIP1Q9BQI5 828 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 SOWAHBA6NEL2 793 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 MYBL1P10243 752 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 EDNRBP24530 442 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 RFC5P40937 340 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 CUL2Q13617 745 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 CCDC105Q8IYK2 499 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 ARFGAP2Q8N6H7 521 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 C12orf50Q8NA57 414 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 CYFIP2Q96F07 1278 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 TMEM134Q9H6X4 195 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 BCCIPQ9P287 314 aaKnown RBP eCLIP22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 ANKFY1Q9P2R3 1169 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 ADGRA2Q96PE1 1338 aa22.26■■□□□ 1.15
CCDC88B-203ENST00000359902 FSCN2O14926 492 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 TRIM66O15016 1216 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 PMS2P54278 862 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 EIF3BP55884 814 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CENPCQ03188 943 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 PHLDB2Q86SQ0 1253 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CNKSR2Q8WXI2 1034 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 RUNDC3BQ96NL0 473 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 EPN3Q9H201 632 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 PABPC3Q9H361 631 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 NRBP2Q9NSY0 501 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CNTNAP2Q9UHC6 1331 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 SIP14410 1827 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 EBAG9O00559 213 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CLDN3O15551 220 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 GBP1P32455 592 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 KCNJ1P48048 391 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 KRT71Q3SY84 523 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 GPC2Q8N158 579 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 TRIM11Q96F44 468 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CGRRF1Q99675 332 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 LRRC19Q9H756 370 aa22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 POLR2AP24928 1970 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-203ENST00000359902 CFHP08603 1231 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms