RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 VSIG1Q86XK7 387 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 STON2Q8WXE9 905 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SCN7AQ01118 1682 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ARPC4-TTLL3A0A0A6YYG9 625 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 A8MXQ7 604 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ADCY8P40145 1251 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GATAD2AQ86YP4 633 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PPHLN1Q8NEY8 458 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SLC13A1Q9BZW2 595 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DDX47Q9H0S4 455 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 IL25Q9H293 177 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TMOD2Q9NZR1 351 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 LRWD1Q9UFC0 647 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PRELID1Q9Y255 219 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RPL17P18621 184 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PEX6Q13608 980 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NFATC2IPQ8NCF5 419 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DBNDD2Q9BQY9 259 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TUBE1Q9UJT0 475 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 HCFC1P51610 2035 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RNMTO43148 476 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GUCY1B2O75343 617 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PGGT1BP53609 377 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RCN2Q14257 317 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ZFRQ96KR1 1074 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SLITRK6Q9H5Y7 841 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TMEM260Q9NX78 707 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CAPN11Q9UMQ6 739 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NWD2Q9ULI1 1742 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NDUFS2O75306 463 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ABL2P42684 1182 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ABCG1P45844 678 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RAP1GAPP47736 663 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CXCR3P49682 368 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ORC1Q13415 861 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CYTH1Q15438 398 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC14Q49A88 953 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CD209Q9NNX6 404 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 HSPA13P48723 471 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 FUT11Q495W5 492 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RNASE12Q5GAN4 147 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 IP6K2Q9UHH9 426 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ATPIF1Q9UII2 106 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PNPLA7Q6ZV29 1317 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TSPAN3O60637 253 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ACAT1P24752 427 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GLG1Q92896 1179 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TRPC6Q9Y210 931 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GSPT1P15170 499 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 LSM3P62310 102 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PDE1BQ01064 536 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NLRP9Q7RTR0 991 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DOK4Q8TEW6 326 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 AFG1LQ8WV93 481 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PLEKHF1Q96S99 279 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SEC31BQ9NQW1 1179 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 XPOTO43592 962 aaKnown RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 WASHC2DQ5SRD0 308 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC197Q8NCU1 140 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 DDI1Q8WTU0 396 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ATXN7L3BQ96GX2 97 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 COMMD8Q9NX08 183 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 SCRN3Q0VDG4 424 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 SPATA5Q8NB90 893 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 FOXP1Q9H334 677 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 RTTNQ86VV8 2226 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 OATP04181 439 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 CTCFP49711 727 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 PLCH1Q4KWH8 1693 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 FSCBQ5H9T9 825 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 SUCLG2Q96I99 432 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 FAM86B1E9PN63 330 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 PSMA7O14818 248 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ATP2A1O14983 1001 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 BNC1Q01954 994 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 CBLBQ13191 982 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 VMP1Q96GC9 406 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ZAP70P43403 619 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 GFPT1Q06210 699 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 TMEM62Q0P6H9 643 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 MUM1Q2TAK8 710 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ADGRG6Q86SQ4 1221 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 PCDHA5Q9Y5H7 936 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 N6AMT1Q9Y5N5 214 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 LOC285556D6RIA3 1793 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 STK36Q9NRP7 1315 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 TRAFD1O14545 582 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 MAPK13O15264 365 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ADCY6O43306 1168 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 TEDDM1Q5T9Z0 273 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 GTF2A1LQ9UNN4 478 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 LEMD3Q9Y2U8 911 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 WBP11Q9Y2W2 641 aaKnown RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 EIF3HO15372 352 aaKnown RBP eCLIP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 RAD23BP54727 409 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 NANOGNBQ7Z5D8 188 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 SPDYE1Q8NFV5 336 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 TUT1Q9H6E5 874 aaKnown RBP3.74□□□□□ -1.81
SYNE1-201ENST00000341594 TOPAZ1Q8N9V7 1692 aa3.74□□□□□ -1.81
SYNE1-201ENST00000341594 ASIC1P78348 528 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms