RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SENP7Q9BQF6 1050 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ERP44Q9BS26 406 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 PPANQ9NQ55 473 aaKnown RBP11.08□□□□□ -0.64
LIMA1-201ENST00000341247 KLHL11Q9NVR0 708 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 PNMA2Q9UL42 364 aa11.08□□□□□ -0.64
LIMA1-201ENST00000341247 ZNFX1Q9P2E3 1918 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GRIN2DO15399 1336 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 MYO1FO00160 1098 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 EXTL3O43909 919 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 PPFIA4O75335 1185 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GGPS1O95749 300 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GZMAP12544 262 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 ALDH5A1P51649 535 aaPredicted RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 OAZ1P54368 228 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 ACAD10Q6JQN1 1059 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 TRAPPC12Q8WVT3 735 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 C12orf42Q96LP6 360 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 RAB17Q9H0T7 212 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 APOBEC3GQ9HC16 384 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 COQ4Q9Y3A0 265 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SNCAIPQ9Y6H5 919 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SBF1O95248 1867 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 MYO1CO00159 1063 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 IRF6O14896 467 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 EIF3HO15372 352 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 CSDE1O75534 798 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SHBGP04278 402 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 RARAP10276 462 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 PEX5P50542 639 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SNRPFP62306 86 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 C11orf63Q6NUN7 778 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 CCDC50Q8IVM0 306 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 C17orf75Q9HAS0 396 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 FAM114A2Q9NRY5 505 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GTF3C4Q9UKN8 822 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 NDUFAB1O14561 156 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GRIN3BO60391 1043 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 VNN1O95497 513 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 GARTP22102 1010 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 TCF7P36402 384 aaPredicted RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SLCO1A2P46721 670 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 RPL21P46778 160 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 IRX3P78415 501 aaPredicted RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 TMEM132AQ24JP5 1023 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 CLEC16AQ2KHT3 1053 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 CRELD2Q6UXH1 353 aaPredicted RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SCARA5Q6ZMJ2 495 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 SRLQ86TD4 932 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 PSPC1Q8WXF1 523 aaKnown RBP11.07□□□□□ -0.64
LIMA1-201ENST00000341247 PCYT2Q99447 389 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 TMBIM4Q9HC24 238 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 CD2APQ9Y5K6 639 aa11.07□□□□□ -0.64
LIMA1-201ENST00000341247 ARID2Q68CP9 1835 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 GSTTP1A0A1W2PQM5 241 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 SOWAHBA6NEL2 793 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 MIF4GDA9UHW6 222 aaKnown RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 FGFR4P22455 802 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 NSFP46459 744 aaKnown RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 STAT5BP51692 787 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 HVCN1Q96D96 273 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 CEP89Q96ST8 783 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 PORCNQ9H237 461 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 MYH9P35579 1960 aaKnown RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 NFASCO94856 1347 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 H0YGN5 161 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 PHF2O75151 1096 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 CYP1A2P05177 515 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 CAPSQ13938 189 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 PPP1R7Q15435 360 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 DUPD1Q68J44 220 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 SLC13A5Q86YT5 568 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 PRPF31Q8WWY3 499 aaKnown RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 COPS5Q92905 334 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 NUB1Q9Y5A7 615 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 CSADQ9Y600 493 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 NFS1Q9Y697 457 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 THAP12O43422 761 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 SHOX2O60902 331 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 RWDD2BP57060 319 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 MAGOHP61326 146 aaKnown RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 ZACNQ401N2 412 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 VTI1AQ96AJ9 217 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 WNT8AQ9H1J5 351 aa11.06□□□□□ -0.64
LIMA1-201ENST00000341247 TTC7AQ9ULT0 858 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 MAFBQ9Y5Q3 323 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-201ENST00000341247 ATP8B3O60423 1300 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 KIAA0391O15091 583 aaKnown RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 FARP2O94887 1054 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 ARIH2O95376 493 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 C4BPAP04003 597 aaKnown RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 GNA15P30679 374 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 IGBP1P78318 339 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 HSDL1Q3SXM5 330 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MMS22LQ6ZRQ5 1243 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 PRUNE1Q86TP1 453 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 THNSL1Q8IYQ7 743 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MCOLN2Q8IZK6 566 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 HERPUD2Q9BSE4 406 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 SPATC1LQ9H0A9 340 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms