RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KRT5P13647 590 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 NCOA4Q13772 614 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 HIC1Q14526 733 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 DEFB115Q30KQ5 88 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 RUFY4Q6ZNE9 571 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 H2AFVQ71UI9 128 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TRAPPC11Q7Z392 1133 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 SLC47A2Q86VL8 602 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 PALB2Q86YC2 1186 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TMEM192Q8IY95 271 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 EPS8L1Q8TE68 723 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 FAM81BQ96LP2 452 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 ACP6Q9NPH0 428 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 JRKLQ9Y4A0 524 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 ATP8B3O60423 1300 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 SMIM35A0A1B0GVV1 85 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 MBLAC1A4D2B0 266 aaPredicted RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 MYADML2A6NDP7 307 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 DUSP11O75319 330 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 MCF2P10911 925 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 FGFR4P22455 802 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TFAMQ00059 246 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TAF3Q5VWG9 929 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 PAPD7Q5XG87 772 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 SRGAP1Q7Z6B7 1085 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 NOP9Q86U38 636 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 RPUSD2Q8IZ73 545 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 IMPG2Q9BZV3 1241 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 RPF1Q9H9Y2 349 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 NOCTQ9UK39 431 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 SAR1BQ9Y6B6 198 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 BTNL10A8MVZ5 291 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 TADA3O75528 432 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 TMEM191BP0C7N4 346 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 PDE6CP51160 858 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 GALCP54803 685 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 NOP14P78316 857 aaKnown RBP14.4□□□□□ -0.1
HMGB1-202ENST00000339872 PURAQ00577 322 aaKnown RBP14.4□□□□□ -0.1
HMGB1-202ENST00000339872 DUOXA2Q1HG44 320 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 ADAMTS10Q9H324 1103 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 APOBEC3GQ9HC16 384 aaKnown RBP14.4□□□□□ -0.1
HMGB1-202ENST00000339872 PUF60Q9UHX1 559 aaKnown RBP14.4□□□□□ -0.1
HMGB1-202ENST00000339872 INTUQ9ULD6 942 aa14.4□□□□□ -0.1
HMGB1-202ENST00000339872 PALMO75781 387 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 STAG3L1P0CL83 205 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 CYP11B1P15538 503 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 CAP1Q01518 475 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 TRIM32Q13049 653 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 ELF2Q15723 593 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 WHAMMP3Q1A5X7 153 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 ERCC6LQ2NKX8 1250 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 SCARA3Q6AZY7 606 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 EFCAB13Q8IY85 973 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 OSMRQ99650 979 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 GCOM2Q9BZD3 368 aaPredicted RBP14.4□□□□□ -0.11
HMGB1-202ENST00000339872 TAS2R14Q9NYV8 317 aa14.4□□□□□ -0.11
HMGB1-202ENST00000339872 UMODL1Q5DID0 1318 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 TREHO43280 583 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 SRGAP2O75044 1071 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 GPR32O75388 356 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 IL18RAPO95256 599 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 CLTAP09496 248 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 ABCB4P21439 1286 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 NOP2P46087 812 aaKnown RBP14.39□□□□□ -0.11
HMGB1-202ENST00000339872 ADAM17P78536 824 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 ZNF200P98182 395 aaPredicted RBP14.39□□□□□ -0.11
HMGB1-202ENST00000339872 SP3Q02447 781 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 CUL2Q13617 745 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 C7orf31Q8N865 590 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 CEP112Q8N8E3 955 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 DNAJB3Q8WWF6 145 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 ANKRD36BP1Q96IX9 119 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 ADPGKQ9BRR6 497 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 NUB1Q9Y5A7 615 aa14.39□□□□□ -0.11
HMGB1-202ENST00000339872 C17orf102A2RUQ5 167 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 EFCAB8A8MWE9 144 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 B4GALT4O60513 344 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 PGK1P00558 417 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CST3P01034 146 aaPredicted RBP14.38□□□□□ -0.11
HMGB1-202ENST00000339872 TNNC2P02585 160 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 MMEP08473 750 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CHRNB2P17787 502 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CDC42EP1Q00587 391 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 GNASQ5JWF2 1037 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CTNNBL1Q8WYA6 563 aaPredicted RBP14.38□□□□□ -0.11
HMGB1-202ENST00000339872 UBXN4Q92575 508 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CDHR5Q9HBB8 845 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 PCDHGC5Q9Y5F6 944 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CENPFP49454 3210 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CITO14578 2027 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 A0A1B0GUA9 196 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 NCK2O43639 380 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 TBXAS1P24557 533 aaPredicted RBP14.38□□□□□ -0.11
HMGB1-202ENST00000339872 GJA9P57773 515 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 MYL6P60660 151 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 TRPC3Q13507 836 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 IFI16Q16666 785 aaKnown RBP14.38□□□□□ -0.11
HMGB1-202ENST00000339872 CATSPER4Q7RTX7 472 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 SNX12Q9UMY4 172 aa14.38□□□□□ -0.11
HMGB1-202ENST00000339872 GRID2IPA4D2P6 1211 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms