RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZSWIM5Q9P217 1185 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 DDX25Q9UHL0 483 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 HERC5Q9UII4 1024 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 ATP8A1Q9Y2Q0 1164 aa5.98□□□□□ -1.45
CSDE1-202ENST00000339438 NOC2LQ9Y3T9 749 aaKnown RBP5.98□□□□□ -1.45
CSDE1-202ENST00000339438 FOXO6A8MYZ6 492 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SUN1O94901 812 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 PAX3P23760 479 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 FOXN2P32314 431 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 GTF2H1P32780 548 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 AP1B1Q10567 949 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 MTFR1Q15390 333 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 P3H1Q32P28 736 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 ACSBG2Q5FVE4 666 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SPDYAQ5MJ70 313 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 C1orf53Q5VUE5 145 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 C3orf62Q6ZUJ4 267 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 AGGF1Q8N302 714 aaeCLIP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 NAT14Q8WUY8 206 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 PPP2R3CQ969Q6 453 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 RAB3IPQ96QF0 476 aaPredicted RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 RBM38Q9H0Z9 239 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 NAPBQ9H115 298 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SEMA6BQ9H3T3 888 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 EPB41L1Q9H4G0 881 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 HAO1Q9UJM8 370 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TTC7AQ9ULT0 858 aaPredicted RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 A0A087X0T9 212 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 GOLGA8AA7E2F4 631 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 MAGEB3O15480 346 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 RAD21O60216 631 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 FAM228BP0C875 321 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CYP2D6P10635 497 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TARSP26639 723 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CYP4A11Q02928 519 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TBL3Q12788 808 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 PTGDRQ13258 359 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 PICALMQ13492 652 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TSR1Q2NL82 804 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SYDE2Q5VT97 1194 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 GPIHBP1Q8IV16 184 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SLF2Q8IX21 1173 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CYP4X1Q8N118 509 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CLEC4DQ8WXI8 215 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TRIM51Q9BSJ1 452 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SEMA4AQ9H3S1 761 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SLITRK6Q9H5Y7 841 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 GBA2Q9HCG7 927 aaPredicted RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 AIPL1Q9NZN9 384 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 SAP30BPQ9UHR5 308 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TMX2Q9Y320 296 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TRIM75PA6NK02 468 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 H0Y3Z8 333 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 MAGEB2O15479 319 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 RNASEH1O60930 286 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 E2F6O75461 281 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 DEXIO95424 95 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CDK4P11802 303 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 HOXD12P35452 270 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 NT5C2P49902 561 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 PMS2P54278 862 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 EIF6P56537 245 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TRIM29Q14134 588 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 LRRC14Q15048 493 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CYP4F22Q6NT55 531 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CATSPERGQ6ZRH7 1159 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 RALYLQ86SE5 291 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 NELFCDQ8IXH7 590 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 DIS3LQ8TF46 1054 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 NOC3LQ8WTT2 800 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 APPBP2Q92624 585 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 OTUD5Q96G74 571 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 CAPNS2Q96L46 248 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 ERVK-5Q9HDB9 667 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 EURLQ9NYK6 297 aa5.97□□□□□ -1.45
CSDE1-202ENST00000339438 TNRC6BQ9UPQ9 1833 aaKnown RBP5.97□□□□□ -1.45
CSDE1-202ENST00000339438 KIAA0391O15091 583 aaKnown RBP5.96□□□□□ -1.45
CSDE1-202ENST00000339438 TPD52L2O43399 206 aaKnown RBP5.96□□□□□ -1.45
CSDE1-202ENST00000339438 TAC1P20366 129 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 STK4Q13043 487 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 GPNMBQ14956 572 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 TSNAXIP1Q2TAA8 658 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 VWA3BQ502W6 1294 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 LRRC74BQ6ZQY2 392 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 ARHGAP18Q8N392 663 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 KIAA0895Q8NCT3 520 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 GAB3Q8WWW8 586 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 SYN2Q92777 582 aaPredicted RBP5.96□□□□□ -1.45
CSDE1-202ENST00000339438 HES6Q96HZ4 224 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 SELENOSQ9BQE4 189 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 UBAC1Q9BSL1 405 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 CADM1Q9BY67 442 aaKnown RBP5.96□□□□□ -1.45
CSDE1-202ENST00000339438 MUC22E2RYF6 1773 aaPredicted RBP5.96□□□□□ -1.45
CSDE1-202ENST00000339438 PFASO15067 1338 aa5.96□□□□□ -1.45
CSDE1-202ENST00000339438 NPHP3-ACAD11A0A0J9YXS1 232 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 KANSL1LA0AUZ9 987 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CCDC188H7C350 402 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 STRNO43815 780 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 PTGIRP43119 386 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms