RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ITFG2Q969R8 447 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TADA1Q96BN2 335 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 VPS45Q9NRW7 570 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TBC1D22BQ9NU19 505 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 WDR37Q9Y2I8 494 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 A0A0D9SFI3 127 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 NQO1P15559 274 aaKnown RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 HSD3B2P26439 372 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 HMOX2P30519 316 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 FXR2P51116 673 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 MYL7Q01449 175 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 R3HDM1Q15032 1099 aaKnown RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 BSPRYQ5W0U4 402 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 FAM178BQ8IXR5 827 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 RCOR2Q8IZ40 523 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 IRGQQ8WZA9 623 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 SLC40A1Q9NP59 571 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 H0YJX3 145 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 NMT2O60551 498 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 PRKCIP41743 596 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 MORF4L2Q15014 288 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 MYLK4Q86YV6 388 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 ZBTB8OSQ8IWT0 167 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TAGAPQ8N103 731 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 FAM81AQ8TBF8 368 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TGS1Q96RS0 853 aaKnown RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 SH3GL1Q99961 368 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 ZBTB21Q9ULJ3 1066 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 PCDHGA3Q9Y5H0 932 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 EVPLLA8MZ36 301 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 WDR64B1ANS9 1081 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 COPEO14579 308 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 CYP2C8P10632 490 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 C7P10643 843 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 POLD2P49005 469 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TMED10P49755 219 aaKnown RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 NR1H2P55055 460 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 EHHADHQ08426 723 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TOP3AQ13472 1001 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-201ENST00000303395 COLGALT2Q8IYK4 626 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 CALML6Q8TD86 181 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 ANKS1AQ92625 1134 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 VTI1BQ9UEU0 232 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 TBK1Q9UHD2 729 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 PALD1Q9ULE6 856 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 KIAA1257Q9ULG3 409 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 PCDHA12Q9UN75 941 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 SOX13Q9UN79 622 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 CHMP2BQ9UQN3 213 aa5.52□□□□□ -1.53
SCN1A-201ENST00000303395 C10orf71Q711Q0 1435 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ZBED4O75132 1171 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TGDSO95455 350 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KCNQ4P56696 695 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 DMP1Q13316 513 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KRT24Q2M2I5 525 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 C16orf87Q6PH81 154 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 XKRXQ6PP77 449 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TMPRSS6Q8IU80 811 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PIGOQ8TEQ8 1089 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GALNT8Q9NY28 637 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 EHD2Q9NZN4 543 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ARHGEF28Q8N1W1 1705 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TRAPPC3O43617 180 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 BAG2O95816 211 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 GUCA1CO95843 209 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 FGAP02671 866 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CYP2C9P11712 490 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MXI1P50539 228 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TTC23Q5W5X9 447 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RAPH1Q70E73 1250 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CHMP1BQ7LBR1 199 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SIX6OS1Q8N1H7 587 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RAB42Q8N4Z0 105 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM35BQ8NCS4 154 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 BLOC1S5Q8TDH9 187 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MRRFQ96E11 262 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ZBTB18Q99592 522 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 BCL7BQ9BQE9 202 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TMBIM4Q9HC24 238 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PANK4Q9NVE7 773 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 BTBD7Q9P203 1132 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM191CA6NGB0 347 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 H7C1W4 665 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 NTRK1P04629 796 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TMEM191BP0C7N4 346 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KCNA6P17658 529 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PRDX6P30041 224 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 RPL5P46777 297 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PLA2G4AP47712 749 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 TOB2Q14106 344 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PIK3AP1Q6ZUJ8 805 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CMTR1Q8N1G2 835 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 SH3GL2Q99962 352 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 DBNDD2Q9BQY9 259 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 MRPL44Q9H9J2 332 aaKnown RBP5.51□□□□□ -1.53
SCN1A-201ENST00000303395 KANSL2Q9H9L4 492 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 CCNB1IP1Q9NPC3 277 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 ATXN10Q9UBB4 475 aa5.51□□□□□ -1.53
SCN1A-201ENST00000303395 PTBP2Q9UKA9 531 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms