RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TNFSF9P41273 254 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 NCKAP1LP55160 1127 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 STRN3Q13033 797 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 ASAP3Q8TDY4 903 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 PPP1R13LQ8WUF5 828 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 C9orf72Q96LT7 481 aa17.78■□□□□ 0.44
VPS54-201ENST00000272322 AGO2Q9UKV8 859 aaKnown RBP17.78■□□□□ 0.44
VPS54-201ENST00000272322 UBE4BO95155 1302 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 SYNGAP1Q96PV0 1343 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 GMNCA6NCL1 334 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 NFKBIEO00221 500 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 THAP12O43422 761 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 PTPRAP18433 802 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 NCAPG2Q86XI2 1143 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 TRPM4Q8TD43 1214 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 DYDC1Q8WWB3 177 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 KIFAP3Q92845 792 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 PAIP2Q9BPZ3 127 aaKnown RBP17.77■□□□□ 0.44
VPS54-201ENST00000272322 ZDHHC18Q9NUE0 388 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 GRHL1Q9NZI5 618 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 PIK3R2O00459 728 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 WEE2P0C1S8 567 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 MAPTP10636 758 aaKnown RBP17.77■□□□□ 0.44
VPS54-201ENST00000272322 RALAP11233 206 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 PLCB3Q01970 1234 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 TDRD10Q5VZ19 366 aaKnown RBP17.77■□□□□ 0.44
VPS54-201ENST00000272322 TRAPPC12Q8WVT3 735 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 MSTO1Q9BUK6 570 aa17.77■□□□□ 0.44
VPS54-201ENST00000272322 DYNLT1P63172 113 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 MTMR3Q13615 1198 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 ZKSCAN8Q15776 578 aaPredicted RBP17.77■□□□□ 0.43
VPS54-201ENST00000272322 THNSL1Q8IYQ7 743 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 GDAP1Q8TB36 358 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 PPM1EQ8WY54 764 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 HAPLN2Q9GZV7 340 aa17.77■□□□□ 0.43
VPS54-201ENST00000272322 RBAKQ9NYW8 714 aaPredicted RBP17.77■□□□□ 0.43
VPS54-201ENST00000272322 CES2O00748 559 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 IFNB1P01574 187 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 EDN1P05305 212 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 PGK2P07205 417 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 PSAPP07602 524 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 KCNA2P16389 499 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 DSG3P32926 999 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 PTGIRP43119 386 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 EMC2Q15006 297 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 ARFGAP2Q8N6H7 521 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 PRMT1Q99873 361 aaKnown RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 ATP6V0A4Q9HBG4 840 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 GGA3Q9NZ52 723 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 SAE1Q9UBE0 346 aaPredicted RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 MTRF1LQ9UGC7 380 aaKnown RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 ZNF541Q9H0D2 1346 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 ECEL1O95672 775 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 RPL7AP62424 266 aaKnown RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 NFIL3Q16649 462 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 IWS1Q96ST2 819 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 ADAM22Q9P0K1 906 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 NXF1Q9UBU9 619 aaKnown RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 ZNF214Q9UL59 606 aaPredicted RBP17.76■□□□□ 0.43
VPS54-201ENST00000272322 C10orf71Q711Q0 1435 aa17.76■□□□□ 0.43
VPS54-201ENST00000272322 GOLGA8SH3BPF8 625 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 GOLGA8MH3BSY2 632 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 ZSCAN5DPP0CG00 497 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 IGBP1P78318 339 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 ACAD10Q6JQN1 1059 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 PLCD3Q8N3E9 789 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 EPB41L4BQ9H329 900 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 PABPC3Q9H361 631 aaKnown RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 A0A087WUV0 522 aaPredicted RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 CST3P01034 146 aaPredicted RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 KRT19P08727 400 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 ADCY2Q08462 1091 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 TMEM63BQ5T3F8 832 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 APOBEC3GQ9HC16 384 aaKnown RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 RNF19AQ9NV58 838 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 CYP39A1Q9NYL5 469 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 DDX20Q9UHI6 824 aaKnown RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 MIF4GDA9UHW6 222 aaKnown RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 ANXA13P27216 316 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 SFNP31947 248 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 CHRNA3P32297 505 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 TAS2R40P59535 323 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 TFAMQ00059 246 aaKnown RBP17.75■□□□□ 0.43
VPS54-201ENST00000272322 EFCAB13Q8IY85 973 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 SLC12A6Q9UHW9 1150 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 GTF3C4Q9UKN8 822 aa17.75■□□□□ 0.43
VPS54-201ENST00000272322 ETS1P14921 441 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 ATP4AP20648 1035 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 LY6KQ17RY6 165 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 CYP4A22Q5TCH4 519 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 MOB2Q70IA6 237 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 ANKS1BQ7Z6G8 1248 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 ELAC2Q9BQ52 826 aaKnown RBP17.74■□□□□ 0.43
VPS54-201ENST00000272322 DGAT1O75907 488 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 GNA15P30679 374 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 HIRAP54198 1017 aaPredicted RBP17.74■□□□□ 0.43
VPS54-201ENST00000272322 CD302Q8IX05 232 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 CEP120Q8N960 986 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 SLC7A3Q8WY07 619 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 DDX1Q92499 740 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms