RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 ATF7IP2Q5U623 682 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 RASAL3Q86YV0 1011 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 IFNLR1Q8IU57 520 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-201ENST00000269318 TAF4BQ92750 862 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 FUT8Q9BYC5 575 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 INO80BQ9C086 356 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-201ENST00000269318 RBM12Q9NTZ6 932 aaKnown RBP17.87■□□□□ 0.45
CCDC40-201ENST00000269318 CPA4Q9UI42 421 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 ZSWIM8A7E2V4 1837 aa17.87■□□□□ 0.45
CCDC40-201ENST00000269318 FAM170AA1A519 330 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 H3BRB1 525 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 IGF2BP3O00425 579 aaKnown RBP eCLIP17.86■□□□□ 0.45
CCDC40-201ENST00000269318 KCNK3O14649 394 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 ADCY6O43306 1168 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 MMP3P08254 477 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 KRT5P13647 590 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 GPC5P78333 572 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 CUL2Q13617 745 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 MORN1Q5T089 497 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 SCARA3Q6AZY7 606 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 IQSEC1Q6DN90 963 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 MSL3Q8N5Y2 521 aaKnown RBP17.86■□□□□ 0.45
CCDC40-201ENST00000269318 PBKQ96KB5 322 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 TUT1Q9H6E5 874 aaKnown RBP17.86■□□□□ 0.45
CCDC40-201ENST00000269318 ERLIN1O75477 346 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 CLTAP09496 248 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 NCOA4Q13772 614 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 PTPROQ16827 1216 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 FAM187BQ17R55 369 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 EEF1DP3Q658K8 133 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 CALR3Q96L12 384 aaKnown RBP17.86■□□□□ 0.45
CCDC40-201ENST00000269318 LRRC1Q9BTT6 524 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 ZHX1Q9UKY1 873 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-201ENST00000269318 TNFSF13BQ9Y275 285 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 NUB1Q9Y5A7 615 aa17.86■□□□□ 0.45
CCDC40-201ENST00000269318 MTA2O94776 668 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 MCM3P25205 808 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 NOP14P78316 857 aaKnown RBP17.85■□□□□ 0.45
CCDC40-201ENST00000269318 AMHR2Q16671 573 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 ZNF568Q3ZCX4 644 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 MTHFD1LQ6UB35 978 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 OR6J1Q8NGC5 347 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 ACTRT1Q8TDG2 376 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 ZCCHC17Q9NP64 241 aaKnown RBP17.85■□□□□ 0.45
CCDC40-201ENST00000269318 PRMT7Q9NVM4 692 aaPredicted RBP17.85■□□□□ 0.45
CCDC40-201ENST00000269318 TMEM59LQ9UK28 342 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 AMFRQ9UKV5 643 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 L1RE1Q9UN81 338 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 CNTN6Q9UQ52 1028 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 EVPLQ92817 2033 aa17.85■□□□□ 0.45
CCDC40-201ENST00000269318 CALCAP01258 141 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 HOXC6P09630 235 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 PHKA2P46019 1235 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 SURF1Q15526 300 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 MARCH8Q5T0T0 291 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 USP38Q8NB14 1042 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 HDAC7Q8WUI4 952 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CDT1Q9H211 546 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 SLC5A4Q9NY91 659 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 PCDHB2Q9Y5E7 798 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 UMODL1Q5DID0 1318 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 A0A087WZ62 844 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 PHACTR2O75167 634 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 ASS1P00966 412 aaKnown RBP17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CST3P01034 146 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CYP1A2P05177 515 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 TBXAS1P24557 533 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CBX1P83916 185 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CLEC16AQ2KHT3 1053 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 C11orf63Q6NUN7 778 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 ZNF677Q86XU0 584 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 RASGEF1CQ8N431 466 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 RUBCNQ92622 972 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 FDXACB1Q9BRP7 624 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-201ENST00000269318 MTMR12Q9C0I1 747 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 CTTNBP2NLQ9P2B4 639 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 TRPM7Q96QT4 1865 aa17.84■□□□□ 0.45
CCDC40-201ENST00000269318 MANSC4A6NHS7 340 aaPredicted RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 MAP2K7O14733 419 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 DDX3YO15523 660 aaKnown RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 UNGP13051 313 aaPredicted RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 PLA2G4AP47712 749 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 ZNF157P51786 506 aaPredicted RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 BPIFB4P59827 614 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 MAP2K5Q13163 448 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 IRF5Q13568 498 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 GRIK4Q16099 956 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 DGKDQ16760 1214 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 ACAD10Q6JQN1 1059 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 CCDC70Q6NSX1 233 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 CDR2LQ86X02 465 aaPredicted RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 THNSL1Q8IYQ7 743 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 KRT222Q8N1A0 295 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 UBR7Q8N806 425 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 CEP120Q8N960 986 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 DMGDHQ9UI17 866 aaKnown RBP17.83■□□□□ 0.44
CCDC40-201ENST00000269318 GTF3C4Q9UKN8 822 aa17.83■□□□□ 0.44
CCDC40-201ENST00000269318 B4GALT4O60513 344 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 VTNP04004 478 aa17.82■□□□□ 0.44
CCDC40-201ENST00000269318 TMOD1P28289 359 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms