RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 APOL6Q9BWW8 343 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 C1orf112Q9NSG2 853 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 HYOU1Q9Y4L1 999 aa17.77■□□□□ 0.43
USP4-201ENST00000265560 MMEP08473 750 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 CD58P19256 250 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 PROZP22891 400 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 MFAP3P55082 362 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 PURAQ00577 322 aaKnown RBP17.76■□□□□ 0.43
USP4-201ENST00000265560 ELF2Q15723 593 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 C7orf31Q8N865 590 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 CGRRF1Q99675 332 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 PRMT7Q9NVM4 692 aaPredicted RBP17.76■□□□□ 0.43
USP4-201ENST00000265560 BZW2Q9Y6E2 419 aaKnown RBP17.76■□□□□ 0.43
USP4-201ENST00000265560 NRCAMQ92823 1304 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 ZEB2O60315 1214 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 TSPAN1O60635 241 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 NFICP08651 508 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 CYBAP13498 195 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 PRKAR2AP13861 404 aaKnown RBP17.76■□□□□ 0.43
USP4-201ENST00000265560 NAB2Q15742 525 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 WDR44Q5JSH3 913 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 MFSD14CQ5VZR4 134 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 TRAPPC11Q7Z392 1133 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 PCDHB18PQ96TA0 734 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 SMARCAL1Q9NZC9 954 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 MYO6Q9UM54 1294 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 ATMINO43313 823 aaPredicted RBP17.76■□□□□ 0.43
USP4-201ENST00000265560 GALCP54803 685 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 CLDN10P78369 228 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 VPS36Q86VN1 386 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 AGPAT1Q99943 283 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 EHD2Q9NZN4 543 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 ZNF236Q9UL36 1845 aa17.76■□□□□ 0.43
USP4-201ENST00000265560 LACTBL1A8MY62 500 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 PALMO75781 387 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 TUBB4AP04350 444 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 NCBP1Q09161 790 aaKnown RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 CATSPER4Q7RTX7 472 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 SLC30A5Q8TAD4 765 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 EPS8L1Q8TE68 723 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 SHC3Q92529 594 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 OSGEPQ9NPF4 335 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 TNFSF13BQ9Y275 285 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 COL1A2P08123 1366 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 GPR32O75388 356 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 CFHP08603 1231 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 CTSHP09668 335 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 WEE2P0C1S8 567 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 GTF2H1P32780 548 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 TERF1P54274 439 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 NOP14P78316 857 aaKnown RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 FAM71AQ8IYT1 594 aa17.75■□□□□ 0.43
USP4-201ENST00000265560 EIF2AQ9BY44 585 aaKnown RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 RPF1Q9H9Y2 349 aaKnown RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 RNF216Q9NWF9 866 aaPredicted RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 NXF1Q9UBU9 619 aaKnown RBP17.75■□□□□ 0.43
USP4-201ENST00000265560 IGHA2P01877 340 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 CHRNB2P17787 502 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 KCTD19Q17RG1 926 aaPredicted RBP17.74■□□□□ 0.43
USP4-201ENST00000265560 TMEM270Q6UE05 265 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 ADAMTS10Q9H324 1103 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 RRN3P2A6NIE6 340 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 CTIFO43310 598 aaKnown RBP17.74■□□□□ 0.43
USP4-201ENST00000265560 TMEM191BP0C7N4 346 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 RNASE9P60153 205 aaKnown RBP17.74■□□□□ 0.43
USP4-201ENST00000265560 ORC1Q13415 861 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 BMS1Q14692 1282 aaKnown RBP17.74■□□□□ 0.43
USP4-201ENST00000265560 KIF22Q14807 665 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 NBPF20Q3BBV1 942 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 ARHGEF26Q96DR7 871 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 HINFPQ9BQA5 517 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 SYT11Q9BT88 431 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 TSGA10Q9BZW7 698 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 THAP2Q9H0W7 228 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 DUSP11O75319 330 aaKnown RBP17.74■□□□□ 0.43
USP4-201ENST00000265560 TACC1O75410 805 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 NPTXRO95502 500 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 ALDH1A1P00352 501 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 GTF2F1P35269 517 aaKnown RBP eCLIP17.74■□□□□ 0.43
USP4-201ENST00000265560 GLRA4Q5JXX5 417 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 TEX35Q5T0J7 233 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 JADE1Q6IE81 842 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 PASD1Q8IV76 773 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 ZNF710Q8N1W2 664 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 WNT8BQ93098 351 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 VTI1AQ96AJ9 217 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 HHIPL1Q96JK4 782 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 NOX5Q96PH1 765 aa17.74■□□□□ 0.43
USP4-201ENST00000265560 KIAA0391O15091 583 aaKnown RBP17.73■□□□□ 0.43
USP4-201ENST00000265560 PJA2O43164 708 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 H2AFZP0C0S5 128 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 CYP11B1P15538 503 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 HOXA11P31270 313 aaPredicted RBP17.73■□□□□ 0.43
USP4-201ENST00000265560 VEGFBP49765 207 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 DUOXA2Q1HG44 320 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 H2AFVQ71UI9 128 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 CREBZFQ9NS37 354 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 MYO1AQ9UBC5 1043 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 CDC23Q9UJX2 597 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 PMM2O15305 246 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms