RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 C1orf112Q9NSG2 853 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ZNF148Q9UQR1 794 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 TMX2Q9Y320 296 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PCDHA3Q9Y5H8 950 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 GOLGA8SH3BPF8 625 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 GOLGA8MH3BSY2 632 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 O00370 1275 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 PAEPP09466 180 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 ZNF394Q53GI3 561 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 WDR44Q5JSH3 913 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 CROCCP2Q86T23 111 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 GTF3C4Q9UKN8 822 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 EXOC7Q9UPT5 735 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 R3HDM2Q9Y2K5 976 aaKnown RBP13.48□□□□□ -0.25
LIG1-201ENST00000263274 C5orf60A6NFR6 353 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 SRRM3A6NNA2 597 aaPredicted RBP13.48□□□□□ -0.25
LIG1-201ENST00000263274 RASA4BC9J798 803 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 IGF2BP3O00425 579 aaKnown RBP eCLIP13.48□□□□□ -0.25
LIG1-201ENST00000263274 RASA4O43374 803 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 ATP9AO75110 1047 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 PIAS1O75925 651 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 ZBTB7AO95365 584 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 NEFHP12036 1026 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 CTNNA2P26232 953 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 CDC25CP30307 473 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 GBP1P32455 592 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 ACOT2P49753 483 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 BTNL9Q6UXG8 535 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 SV2AQ7L0J3 742 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 VSIG1Q86XK7 387 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 FAM71AQ8IYT1 594 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 STAMBPL1Q96FJ0 436 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 TXLNGYQ9BZA5 131 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 SERPINA10Q9UK55 444 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 PNMA3Q9UL41 463 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 USP15Q9Y4E8 981 aaPredicted RBP13.48□□□□□ -0.25
LIG1-201ENST00000263274 WDR91A4D1P6 747 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 RFX1P22670 979 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 DRG2P55039 364 aaKnown RBP13.48□□□□□ -0.25
LIG1-201ENST00000263274 CDR2Q01850 454 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 ACCSLQ4AC99 568 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 SNF8Q96H20 258 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 KLHL14Q9P2G3 628 aa13.48□□□□□ -0.25
LIG1-201ENST00000263274 CDK5RAP2Q96SN8 1893 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ATP6V1G2O95670 118 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 GZMAP12544 262 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 KRT10P13645 584 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 SLC8A1P32418 973 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 SEPT7Q16181 437 aaKnown RBP13.47□□□□□ -0.25
LIG1-201ENST00000263274 TKFCQ3LXA3 575 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 SEZ6Q53EL9 994 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ARHGEF16Q5VV41 709 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 FAM228AQ86W67 206 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 KCNV2Q8TDN2 545 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 PARD3BQ8TEW8 1205 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ART4Q93070 314 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 LBHD1Q9BQE6 289 aaPredicted RBP13.47□□□□□ -0.25
LIG1-201ENST00000263274 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.47□□□□□ -0.255e-7■■■■□ 21.5
LIG1-201ENST00000263274 KCND2Q9NZV8 630 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 NOCTQ9UK39 431 aaKnown RBP13.47□□□□□ -0.25
LIG1-201ENST00000263274 AGAP1Q9UPQ3 857 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 SBF2Q86WG5 1849 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 PCNTO95613 3336 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 UBE4BO95155 1302 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 GGPS1O95749 300 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ATP5DP30049 168 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 NPTX2P47972 431 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ATP13A4Q4VNC1 1196 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 C1orf220Q5T0J3 134 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 IZUMO3Q5VZ72 239 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ACAD10Q6JQN1 1059 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 TMEM270Q6UE05 265 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 RMDN3Q96TC7 470 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 RIT2Q99578 217 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 TRIM6Q9C030 488 aaPredicted RBP13.47□□□□□ -0.25
LIG1-201ENST00000263274 SAYSD1Q9NPB0 183 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIG1-201ENST00000263274 ANKFY1Q9P2R3 1169 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 CNOT7Q9UIV1 285 aaKnown RBP13.47□□□□□ -0.25
LIG1-201ENST00000263274 PCDHB4Q9Y5E5 795 aa13.47□□□□□ -0.25
LIG1-201ENST00000263274 ASAP2O43150 1006 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 SNX3O60493 162 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 ENTPD3O75355 529 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 SLC9A9Q8IVB4 645 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 CYP4X1Q8N118 509 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 C4orf33Q8N1A6 199 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 LARGE2Q8N3Y3 721 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 CENPTQ96BT3 561 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 PITPNM3Q9BZ71 974 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 GABBR1Q9UBS5 961 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 SEPT9Q9UHD8 586 aaPredicted RBP13.46□□□□□ -0.25
LIG1-201ENST00000263274 TBX20Q9UMR3 447 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 ARFGEF1Q9Y6D6 1849 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 BTAF1O14981 1849 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 A8MUI8 341 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 POTEJP0CG39 1038 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 CETN2P41208 172 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 PIK3CAP42336 1068 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 DYNLT1P63172 113 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 TMEM132AQ24JP5 1023 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms