RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ETNK1Q9HBU6 452 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 ANAPC5Q9UJX4 755 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 ZMYND8Q9ULU4 1186 aaPredicted RBP13.23□□□□□ -0.29
NUP88-201ENST00000225696 QSER1Q2KHR3 1735 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 MROH7Q68CQ1 1323 aa13.23□□□□□ -0.29
NUP88-201ENST00000225696 SLC16A4O15374 487 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CCNB1P14635 433 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 GM2AP17900 193 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 ITGB5P18084 799 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CCND1P24385 295 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 PDE6BP35913 854 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CCNHP51946 323 aaPredicted RBP13.22□□□□□ -0.29
NUP88-201ENST00000225696 CDR2Q01850 454 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CETN1Q12798 172 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 PTK6Q13882 451 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 MTFR1Q15390 333 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CYP4F22Q6NT55 531 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 GLIS1Q8NBF1 620 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CCHCR1Q8TD31 782 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 CPA5Q8WXQ8 436 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 FAM167BQ9BTA0 163 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 TRIM6Q9C030 488 aaPredicted RBP13.22□□□□□ -0.29
NUP88-201ENST00000225696 EURLQ9NYK6 297 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 NEU2Q9Y3R4 380 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 POLRMTO00411 1230 aaKnown RBP13.22□□□□□ -0.29
NUP88-201ENST00000225696 POLR2MP0CAP2 368 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 GCAP28676 217 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 SSTR3P32745 418 aaPredicted RBP13.22□□□□□ -0.29
NUP88-201ENST00000225696 DNAJC3Q13217 504 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 GRIPAP1Q4V328 841 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 ANKRD20A2Q5SQ80 823 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 ANKRD20A1Q5TYW2 823 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 ANKRD20A3Q5VUR7 823 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 SEPT12Q8IYM1 358 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 MORC4Q8TE76 937 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 MAGEB18Q96M61 343 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 ZHX2Q9Y6X8 837 aa13.22□□□□□ -0.29
NUP88-201ENST00000225696 UNC5CO95185 931 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 CFHP08603 1231 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 VIL1P09327 827 aaKnown RBP13.21□□□□□ -0.29
NUP88-201ENST00000225696 RALAP11233 206 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 ATF2P15336 505 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 TARSP26639 723 aaKnown RBP13.21□□□□□ -0.29
NUP88-201ENST00000225696 MAPK4P31152 587 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 STAT2P52630 851 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 TMED2Q15363 201 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 ACAD10Q6JQN1 1059 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 HAUS6Q7Z4H7 955 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 KCTD17Q8N5Z5 321 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 GBP7Q8N8V2 638 aaPredicted RBP13.21□□□□□ -0.29
NUP88-201ENST00000225696 IL31RAQ8NI17 732 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 SPDL1Q96EA4 605 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 DDX27Q96GQ7 796 aaKnown RBP13.21□□□□□ -0.29
NUP88-201ENST00000225696 PITPNM3Q9BZ71 974 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 KCND2Q9NZV8 630 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 KLHL14Q9P2G3 628 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 UVRAGQ9P2Y5 699 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 CHKBQ9Y259 395 aa13.21□□□□□ -0.29
NUP88-201ENST00000225696 RASA4BC9J798 803 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 P4HA2O15460 535 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 RASA4O43374 803 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 FGFR1P11362 822 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 PEX3P56589 373 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 MYBPC2Q14324 1141 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 FASTKD3Q14CZ7 662 aaKnown RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 ZYXQ15942 572 aaKnown RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 SNRNP35Q16560 246 aaKnown RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 RNF43Q68DV7 783 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 NAIF1Q69YI7 327 aaPredicted RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 MAML1Q92585 1016 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 ERP27Q96DN0 273 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 ACCSQ96QU6 501 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 TRAIPQ9BWF2 469 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 WDR11Q9BZH6 1224 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 TDRD3Q9H7E2 651 aaKnown RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 FBXO28Q9NVF7 368 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 LARSQ9P2J5 1176 aaKnown RBP13.21□□□□□ -0.3
NUP88-201ENST00000225696 LGALS13Q9UHV8 139 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 HAO1Q9UJM8 370 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 NUMBLQ9Y6R0 609 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 ADGRA3Q8IWK6 1321 aa13.21□□□□□ -0.3
NUP88-201ENST00000225696 KLRG2A4D1S0 409 aaPredicted RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 TCEA3O75764 348 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 PIAS1O75925 651 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 MYCNP04198 464 aaPredicted RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 FDX1P10109 184 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 ATP2A2P16615 1042 aaKnown RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 RARRES1P49788 294 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 MFAP3P55082 362 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 SOX10P56693 466 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 UGCGQ16739 394 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 CLEC16AQ2KHT3 1053 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 CAPN12Q6ZSI9 719 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 POMGNT1Q8WZA1 660 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 MRRFQ96E11 262 aaKnown RBP13.2□□□□□ -0.3
NUP88-201ENST00000225696 TEKT3Q9BXF9 490 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 IDI2Q9BXS1 227 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 TMEM206Q9H813 350 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 KLHL11Q9NVR0 708 aa13.2□□□□□ -0.3
NUP88-201ENST00000225696 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms