RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W MAL13P53338 473 aa0.29□□□□□ -2.36
PRP42YDR235W CTF19Q02732 369 aa0.29□□□□□ -2.36
PRP42YDR235W MRPS8Q03799 155 aa0.29□□□□□ -2.36
PRP42YDR235W INM2Q05533 292 aa0.29□□□□□ -2.36
PRP42YDR235W YLR413WQ06689 675 aa0.29□□□□□ -2.36
PRP42YDR235W AKR2Q12013 749 aa0.29□□□□□ -2.36
PRP42YDR235W SME1Q12330 94 aaPredicted RBP0.29□□□□□ -2.36
PRP42YDR235W DCN1Q12395 269 aa0.29□□□□□ -2.36
PRP42YDR235W EMP46Q12396 444 aa0.29□□□□□ -2.36
PRP42YDR235W FMP16Q12497 93 aa0.29□□□□□ -2.36
PRP42YDR235W YPL119C-AQ3E751 87 aa0.29□□□□□ -2.36
PRP42YDR235W YLR462WO13556 202 aa0.28□□□□□ -2.36
PRP42YDR235W HIS1P00498 297 aaKnown RBP0.28□□□□□ -2.36
PRP42YDR235W DSF1P0CX08 502 aa0.28□□□□□ -2.36
PRP42YDR235W YNR073CP0CX09 502 aa0.28□□□□□ -2.36
PRP42YDR235W MDH2P22133 377 aa0.28□□□□□ -2.36
PRP42YDR235W MDH3P32419 343 aaKnown RBP RIP-Chip data0.28□□□□□ -2.36not detected
PRP42YDR235W YKL070WP36087 169 aa0.28□□□□□ -2.36
PRP42YDR235W MSA2P36157 363 aa0.28□□□□□ -2.36
PRP42YDR235W MRPL40P36534 297 aa0.28□□□□□ -2.36
PRP42YDR235W PHO88P38264 188 aaPredicted RBP0.28□□□□□ -2.36
PRP42YDR235W YBR219CP38317 127 aa0.28□□□□□ -2.36
PRP42YDR235W YHR022CP38763 256 aa0.28□□□□□ -2.36
PRP42YDR235W DOG1P38774 246 aa0.28□□□□□ -2.36
PRP42YDR235W DSE2P38844 325 aa0.28□□□□□ -2.36
PRP42YDR235W RCY1P39531 840 aa0.28□□□□□ -2.36
PRP42YDR235W YEL075CP39972 122 aa0.28□□□□□ -2.36
PRP42YDR235W YER135CP40082 130 aa0.28□□□□□ -2.36
PRP42YDR235W COA1P40452 197 aa0.28□□□□□ -2.36
PRP42YDR235W YGL034CP53186 121 aa0.28□□□□□ -2.36
PRP42YDR235W YGR219WP53307 113 aa0.28□□□□□ -2.36
PRP42YDR235W CYT2Q00873 224 aa0.28□□□□□ -2.36
PRP42YDR235W NUP49Q02199 472 aa0.28□□□□□ -2.36
PRP42YDR235W GOT1Q03554 138 aa0.28□□□□□ -2.36
PRP42YDR235W GMC2Q06201 188 aa0.28□□□□□ -2.36
PRP42YDR235W YPR147CQ06522 304 aaKnown RBP0.28□□□□□ -2.36
PRP42YDR235W YIL002W-AQ3E7Z5 69 aa0.28□□□□□ -2.36
PRP42YDR235W SWI1P09547 1314 aa0.28□□□□□ -2.36
PRP42YDR235W SSK22P25390 1331 aaPredicted RBP0.28□□□□□ -2.36
PRP42YDR235W VPS3P23643 1011 aa0.27□□□□□ -2.37
PRP42YDR235W OAC1P32332 324 aa0.27□□□□□ -2.37
PRP42YDR235W QRI5P32344 111 aa0.27□□□□□ -2.37
PRP42YDR235W ERV15P38312 142 aa0.27□□□□□ -2.37
PRP42YDR235W CTR2P38865 189 aa0.27□□□□□ -2.37
PRP42YDR235W GLE2P40066 365 aa0.27□□□□□ -2.37
PRP42YDR235W DDI1P40087 428 aa0.27□□□□□ -2.37
PRP42YDR235W YER189WP40104 122 aa0.27□□□□□ -2.37
PRP42YDR235W DSN1P40568 576 aa0.27□□□□□ -2.37
PRP42YDR235W SNZ3P43545 298 aa0.27□□□□□ -2.37
PRP42YDR235W YGL159WP53110 370 aa0.27□□□□□ -2.37
PRP42YDR235W EGD1Q02642 157 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W YMR279CQ03263 540 aa0.27□□□□□ -2.37
PRP42YDR235W OST6Q03723 332 aa0.27□□□□□ -2.37
PRP42YDR235W YDR124WQ04608 324 aa0.27□□□□□ -2.37
PRP42YDR235W MEU1Q07938 337 aaKnown RBP RIP-Chip data0.27□□□□□ -2.37not detected
PRP42YDR235W YLR030WQ07967 263 aa0.27□□□□□ -2.37
PRP42YDR235W CSI2Q08054 341 aa0.27□□□□□ -2.37
PRP42YDR235W COX5AP00424 153 aa0.27□□□□□ -2.37
PRP42YDR235W RPL9AP05738 191 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W SSA3P09435 649 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W DDI2P0CH63 225 aa0.27□□□□□ -2.37
PRP42YDR235W DDI3P0CH64 225 aa0.27□□□□□ -2.37
PRP42YDR235W MRP1P10662 321 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W FPR1P20081 114 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W DBP3P20447 523 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W YGL010WP25338 174 aa0.27□□□□□ -2.37
PRP42YDR235W ERG24P32462 438 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W JEN1P36035 616 aa0.27□□□□□ -2.37
PRP42YDR235W FZO1P38297 855 aa0.27□□□□□ -2.37
PRP42YDR235W PEX18P38855 283 aa0.27□□□□□ -2.37
PRP42YDR235W FIS1P40515 155 aa0.27□□□□□ -2.37
PRP42YDR235W YKE4P40544 346 aa0.27□□□□□ -2.37
PRP42YDR235W RPL9BP51401 191 aaKnown RBP0.27□□□□□ -2.37
PRP42YDR235W KAP114P53067 1004 aa0.27□□□□□ -2.37
PRP42YDR235W MRH4P53166 561 aa0.27□□□□□ -2.37
PRP42YDR235W YNR062CP53748 327 aa0.27□□□□□ -2.37
PRP42YDR235W SNZ2P53824 298 aa0.27□□□□□ -2.37
PRP42YDR235W BUD25P85052 153 aa0.27□□□□□ -2.37
PRP42YDR235W ATG17Q06410 417 aa0.27□□□□□ -2.37
PRP42YDR235W SYC1Q08553 188 aaPredicted RBP0.27□□□□□ -2.37
PRP42YDR235W YPL257WQ08974 193 aa0.27□□□□□ -2.37
PRP42YDR235W FLO9P39712 1322 aa0.26□□□□□ -2.37
PRP42YDR235W IPP1P00817 287 aaKnown RBP0.26□□□□□ -2.37
PRP42YDR235W MSW1P04803 379 aa0.26□□□□□ -2.37
PRP42YDR235W YKR104WP0CE69 306 aa0.26□□□□□ -2.37
PRP42YDR235W DAL80P26343 269 aa0.26□□□□□ -2.37
PRP42YDR235W SGE1P33335 543 aa0.26□□□□□ -2.37
PRP42YDR235W MRPL39P36533 70 aa0.26□□□□□ -2.37
PRP42YDR235W MRX3P38172 270 aa0.26□□□□□ -2.37
PRP42YDR235W YBR220CP38318 560 aa0.26□□□□□ -2.37
PRP42YDR235W PRS2P38620 318 aaKnown RBP0.26□□□□□ -2.37
PRP42YDR235W AVT2P39981 480 aa0.26□□□□□ -2.37
PRP42YDR235W AGE2P40529 298 aa0.26□□□□□ -2.37
PRP42YDR235W YIL001WP40560 513 aa0.26□□□□□ -2.37
PRP42YDR235W EMC2P47133 292 aaKnown RBP0.26□□□□□ -2.37
PRP42YDR235W JHD2P47156 728 aaPredicted RBP0.26□□□□□ -2.37
PRP42YDR235W GTR2P53290 341 aa0.26□□□□□ -2.37
PRP42YDR235W ERV29P53337 310 aa0.26□□□□□ -2.37
PRP42YDR235W ALG11P53954 548 aaKnown RBP0.26□□□□□ -2.37
PRP42YDR235W MZM1Q03429 123 aaPredicted RBP0.26□□□□□ -2.37
Retrieved 100 of 5,963 RNA–protein pairs in 56.3 ms