RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 CDH16O75309 829 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 ALOX15P16050 662 aaPredicted RBP12.79□□□□□ -0.36
CAPN3-221ENST00000638141 VCAM1P19320 739 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 IGHMBP2P38935 993 aaKnown RBP12.79□□□□□ -0.36
CAPN3-221ENST00000638141 WDR4P57081 412 aaKnown RBP12.79□□□□□ -0.36
CAPN3-221ENST00000638141 CABP4P57796 275 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 TXNRD1Q16881 649 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 RC3H1Q5TC82 1133 aaKnown RBP12.79□□□□□ -0.36
CAPN3-221ENST00000638141 OLFML2BQ68BL8 750 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 PPP4R3CPQ6ZMV5 832 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 KRT25Q7Z3Z0 450 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 GPAMQ9HCL2 828 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 INIPQ9NRY2 104 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 WHRNQ9P202 907 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 PCDHA6Q9UN73 950 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 PCDHA8Q9Y5H6 950 aa12.79□□□□□ -0.36
CAPN3-221ENST00000638141 LAMB1P07942 1786 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 KCPQ6ZWJ8 1503 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 MAGEC1O60732 1142 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 RNASEH1O60930 286 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 DNAJC6O75061 913 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 SUPT3HO75486 399 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 HARSP12081 509 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 GTF2H1P32780 548 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 EPS15P42566 896 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 PDE1BQ01064 536 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 KRT72Q14CN4 511 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 FAM47EQ6ZV65 393 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 NLRP9Q7RTR0 991 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 CROCCP3Q8IVE0 287 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 DENND1AQ8TEH3 1009 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 RFFLQ8WZ73 363 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 METTL5Q9NRN9 209 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 TTC4O95801 387 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 TMEM253P0C7T8 217 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 ANPEPP15144 967 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 MTTPP55157 894 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 CDC16Q13042 620 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 PRPF4BQ13523 1007 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 SPARCL1Q14515 664 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 CLPPQ16740 277 aaPredicted RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 PDCD4Q53EL6 469 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 DPY19L2P1Q6NXN4 242 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 ATP11CQ8NB49 1132 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 UHMK1Q8TAS1 419 aaKnown RBP12.78□□□□□ -0.36
CAPN3-221ENST00000638141 SLCO2A1Q92959 643 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 ABHD8Q96I13 439 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 ANKRD2Q9GZV1 360 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 ZBTB3Q9H5J0 574 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 MLXIPLQ9NP71 852 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 TMOD4Q9NZQ9 345 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 NUB1Q9Y5A7 615 aa12.78□□□□□ -0.36
CAPN3-221ENST00000638141 CCDC162PA2VCL2 907 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 MIF4GDA9UHW6 222 aaKnown RBP12.77□□□□□ -0.36
CAPN3-221ENST00000638141 GRIA2P42262 883 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 HADHBP55084 474 aaKnown RBP12.77□□□□□ -0.36
CAPN3-221ENST00000638141 BCL2A1Q16548 175 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 KYNUQ16719 465 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 HSP90AA5PQ58FG0 334 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 BORAQ6PGQ7 559 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 RHBDF2Q6PJF5 856 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 PRELID2Q8N945 189 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 DQX1Q8TE96 717 aaKnown RBP12.77□□□□□ -0.36
CAPN3-221ENST00000638141 DYDC2Q96IM9 177 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 NSL1Q96IY1 281 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 PRICKLE1Q96MT3 831 aaPredicted RBP12.77□□□□□ -0.36
CAPN3-221ENST00000638141 UTP6Q9NYH9 597 aaKnown RBP12.77□□□□□ -0.36
CAPN3-221ENST00000638141 PLK2Q9NYY3 685 aa12.77□□□□□ -0.36
CAPN3-221ENST00000638141 PCDH11YQ9BZA8 1340 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 SRCAPQ6ZRS2 3230 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 MYMKA6NI61 221 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 E9PBE3 544 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 NDC80O14777 642 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 VILLO15195 856 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 GYG2O15488 501 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 GAS8O95995 478 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 ARHGAP4P98171 946 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 ASPHQ12797 758 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 TRMT5Q32P41 509 aaKnown RBP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 SH3D19Q5HYK7 790 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 Q6ZNX1 250 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 EPM2AIP1Q7L775 607 aaPredicted RBP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 NET1Q7Z628 596 aaPredicted RBP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 BBS5Q8N3I7 341 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 C12orf50Q8NA57 414 aaPredicted RBP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 LARP4BQ92615 738 aaKnown RBP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 MCUR1Q96AQ8 359 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 ITPKCQ96DU7 683 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 PLIN2Q99541 437 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 C17orf75Q9HAS0 396 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 USP29Q9HBJ7 922 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 AAASQ9NRG9 546 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 NDE1Q9NXR1 346 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 ZNHIT2Q9UHR6 403 aa12.77□□□□□ -0.37
CAPN3-221ENST00000638141 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.77□□□□□ -0.37
CAPN3-221ENST00000638141 HTR3EA5X5Y0 456 aa12.76□□□□□ -0.37
CAPN3-221ENST00000638141 SLC26A4O43511 780 aa12.76□□□□□ -0.37
CAPN3-221ENST00000638141 RPL5P46777 297 aaKnown RBP12.76□□□□□ -0.37
CAPN3-221ENST00000638141 CTSWP56202 376 aa12.76□□□□□ -0.37
CAPN3-221ENST00000638141 GEMIN4P57678 1058 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms