RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ARL2P36404 184 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 GCLMP48507 274 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 HADHBP55084 474 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 CYP24A1Q07973 514 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 MTERF2Q49AM1 385 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 CELF3Q5SZQ8 465 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 DHX37Q8IY37 1157 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 AFG1LQ8WV93 481 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 CTNNBL1Q8WYA6 563 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 BSNDQ8WZ55 320 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 RFFLQ8WZ73 363 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 AGPAT1Q99943 283 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 JPH2Q9BR39 696 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 VIPAS39Q9H9C1 493 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 SUCLA2Q9P2R7 463 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 DNAH12Q6ZR08 3092 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 KIAA0100Q14667 2235 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 HNRNPDLO14979 420 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 ZNF185O15231 689 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 C6orf222P0C671 652 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 GZMAP12544 262 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 VSNL1P62760 191 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 DLG4P78352 724 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 HSDL1Q3SXM5 330 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 NFRKBQ6P4R8 1299 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 RHOT2Q8IXI1 618 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 FBXL13Q8NEE6 735 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 TPCN2Q8NHX9 752 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 COG1Q8WTW3 980 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 DHX38Q92620 1227 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 ABHD8Q96I13 439 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 NT5C1BQ96P26 610 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 SH2D3AQ9BRG2 576 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 PACSIN1Q9BY11 444 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 FOXN3O00409 490 aaPredicted RBP19.79■□□□□ 0.76
CLN3-263ENST00000637871 ADAMTS4O75173 837 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 CLSTN1O94985 981 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 ADRB2P07550 413 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 LIG4P49917 911 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 SLC26A2P50443 739 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 STAT5BP51692 787 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 GALCP54803 685 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 CLDN10P78369 228 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 TARBP2Q15633 366 aaKnown RBP19.79■□□□□ 0.76
CLN3-263ENST00000637871 FAM71AQ8IYT1 594 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 TNS4Q8IZW8 715 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 LRRC57Q8N9N7 239 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 DEPTORQ8TB45 409 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 TCP11Q8WWU5 503 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 BICD1Q96G01 975 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 SPATA33Q96N06 139 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 UBXN6Q9BZV1 441 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 ABCB6Q9NP58 842 aa19.79■□□□□ 0.76
CLN3-263ENST00000637871 MKI67P46013 3256 aaKnown RBP19.78■□□□□ 0.76
CLN3-263ENST00000637871 GSTTP1A0A1W2PQM5 241 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 TISP43B9A030 160 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 SEC31AO94979 1220 aaKnown RBP19.78■□□□□ 0.76
CLN3-263ENST00000637871 KIF4AO95239 1232 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 EFNA5P52803 228 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 ARHGAP44Q17R89 818 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 CBWD2Q8IUF1 395 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 LNX1Q8TBB1 728 aaPredicted RBP19.78■□□□□ 0.76
CLN3-263ENST00000637871 ARID3AQ99856 593 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 AP5M1Q9H0R1 490 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 AZI2Q9H6S1 392 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 RAB20Q9NX57 234 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 WDR81Q562E7 1941 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 ARID2Q68CP9 1835 aa19.78■□□□□ 0.76
CLN3-263ENST00000637871 MSCO60682 206 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 TFRCP02786 760 aaKnown RBP19.77■□□□□ 0.76
CLN3-263ENST00000637871 GJB1P08034 283 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 ATP4AP20648 1035 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 TNFRSF8P28908 595 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 PLA2G4AP47712 749 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 GJA9P57773 515 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 PSMD6Q15008 389 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 PLPPR4Q7Z2D5 763 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 GLYCTKQ8IVS8 523 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 PLEKHO2Q8TD55 490 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 ACTRT1Q8TDG2 376 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 BBXQ8WY36 941 aaPredicted RBP19.77■□□□□ 0.76
CLN3-263ENST00000637871 SHC3Q92529 594 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 UPF3AQ9H1J1 476 aaKnown RBP19.77■□□□□ 0.76
CLN3-263ENST00000637871 ISCUQ9H1K1 167 aa19.77■□□□□ 0.76
CLN3-263ENST00000637871 MYH10P35580 1976 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 LRRIQ3A6PVS8 624 aaPredicted RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 K7ERI5 159 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 MAFO75444 373 aaPredicted RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 LGR5O75473 907 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 MMP3P08254 477 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 AP3M2P53677 418 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 TNNC1P63316 161 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 GCNT1Q02742 428 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 FSCN1Q16658 493 aaKnown RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 IER5Q5VY09 327 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 SLC39A4Q6P5W5 647 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 CCNI2Q6ZMN8 369 aaPredicted RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 TRMT1LQ7Z2T5 733 aaKnown RBP19.76■□□□□ 0.75
CLN3-263ENST00000637871 PEX26Q7Z412 305 aa19.76■□□□□ 0.75
CLN3-263ENST00000637871 GPIHBP1Q8IV16 184 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms