RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FBXW11Q9UKB1 542 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 NUMBLQ9Y6R0 609 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 C2orf16Q68DN1 1984 aa17.8■□□□□ 0.44
CLN3-246ENST00000636228 PRR23AA6NEV1 266 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 CCL16O15467 120 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 C1RP00736 705 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 RFX1P22670 979 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 FSHRP23945 695 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 PPP2R5AQ15172 486 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 ANGPT1Q15389 498 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 ATF7IP2Q5U623 682 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 IFT74Q96LB3 600 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 RTP3Q9BQQ7 232 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 LLPHQ9BRT6 129 aaKnown RBP17.79■□□□□ 0.44
CLN3-246ENST00000636228 DDX19AQ9NUU7 478 aaKnown RBP17.79■□□□□ 0.44
CLN3-246ENST00000636228 POLIQ9UNA4 740 aa17.79■□□□□ 0.44
CLN3-246ENST00000636228 PP2D1A8MPX8 630 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 ANHXE9PGG2 379 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 E9PMD0 336 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 I3L4J1 428 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 C8AP07357 584 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 SRFP11831 508 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 OR1D2P34982 312 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 RBM25P49756 843 aaKnown RBP17.78■□□□□ 0.44
CLN3-246ENST00000636228 FXR2P51116 673 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-246ENST00000636228 CLCNKBP51801 687 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 HTR4Q13639 388 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 SPECC1Q5M775 1068 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 PPM1LQ5SGD2 360 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 HAUS3Q68CZ6 603 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 PARM1Q6UWI2 310 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 CD300LGQ6UXG3 332 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 RSPO2Q6UXX9 243 aaPredicted RBP17.78■□□□□ 0.44
CLN3-246ENST00000636228 CEP120Q8N960 986 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 FAM184AQ8NB25 1140 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 TBC1D17Q9HA65 648 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 PCDHB6Q9Y5E3 794 aa17.78■□□□□ 0.44
CLN3-246ENST00000636228 CCDC169A6NNP5 214 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 K7ERI5 159 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 B3GAT3O94766 335 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 DCNP07585 359 aaKnown RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 CDC25AP30304 524 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 BRCC3P46736 316 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 TOB1P50616 345 aaPredicted RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 OSTNP61366 133 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 ORC2Q13416 577 aaPredicted RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 DCAF4L1Q3SXM0 396 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 LIN9Q5TKA1 542 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 ITFG1Q8TB96 612 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 SLC7A14Q8TBB6 771 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 SNX29Q8TEQ0 813 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 FGF14Q92915 247 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 NKD2Q969F2 451 aaPredicted RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 NXPE3Q969Y0 559 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 PPP1R10Q96QC0 940 aaKnown RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 HCFC1R1Q9NWW0 138 aa17.77■□□□□ 0.44
CLN3-246ENST00000636228 NOL7Q9UMY1 257 aaKnown RBP17.77■□□□□ 0.44
CLN3-246ENST00000636228 CACNA1HO95180 2353 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 MUTP22033 750 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 FGFR3P22607 806 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 TKTP29401 623 aaKnown RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 EFNA5P52803 228 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 PEX3P56589 373 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 GPC5P78333 572 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 SOX4Q06945 474 aaPredicted RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 ELAVL2Q12926 359 aaKnown RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 PTGDRQ13258 359 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 IL17AQ16552 155 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 AXDND1Q5T1B0 1012 aaPredicted RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 DCLRE1AQ6PJP8 1040 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 C3orf58Q8NDZ4 430 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 KIFAP3Q92845 792 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 CDH7Q9ULB5 785 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 CDY1Q9Y6F8 540 aa17.76■□□□□ 0.43
CLN3-246ENST00000636228 TDRD15B5MCY1 1934 aaKnown RBP17.76■□□□□ 0.43
CLN3-246ENST00000636228 SMIM28A0A1B0GU29 152 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 HIP1RO75146 1068 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 HNRNPA1P09651 372 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-246ENST00000636228 NPTX2P47972 431 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 HMGN5P82970 282 aaKnown RBP17.75■□□□□ 0.43
CLN3-246ENST00000636228 RAB33AQ14088 237 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 PDIA5Q14554 519 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 DAW1Q8N136 415 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 FGF13Q92913 245 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 ZSCAN31Q96LW9 406 aaPredicted RBP17.75■□□□□ 0.43
CLN3-246ENST00000636228 KIF2CQ99661 725 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 ACO2Q99798 780 aaKnown RBP17.75■□□□□ 0.43
CLN3-246ENST00000636228 ARHGEF3Q9NR81 526 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 TNFSF13BQ9Y275 285 aa17.75■□□□□ 0.43
CLN3-246ENST00000636228 SFI1A8K8P3 1242 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 LRRN2O75325 713 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 TRAPPC10P48553 1259 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 UPP1Q16831 310 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 TAS1R3Q7RTX0 852 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 KCNK18Q7Z418 384 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 ADSSL1Q8N142 457 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 IGSF22Q8N9C0 903 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 ING5Q8WYH8 240 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 ZMAT2Q96NC0 199 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms