RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CASP1P29466 404 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 XKR4Q5GH76 650 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 FAM26FQ5R3K3 315 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 SLC39A4Q6P5W5 647 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 VPS52Q8N1B4 723 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 SNX27Q96L92 541 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 GOLPH3LQ9H4A5 285 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 PLEKHA5Q9HAU0 1116 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 SLC38A7Q9NVC3 462 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 STYXL1Q9Y6J8 313 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 SMIM28A0A1B0GU29 152 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 ANKRD63C9JTQ0 380 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 FSCN2O14926 492 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 KCNE1P15382 129 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 KCNA1Q09470 495 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 SMC1AQ14683 1233 aaKnown RBP22.59■■□□□ 1.21
CLN3-240ENST00000631023 SEZ6Q53EL9 994 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 GLRA4Q5JXX5 417 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 KANK3Q6NY19 840 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 KRBA2Q6ZNG9 492 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 POMGNT1Q8WZA1 660 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 HLA-CQ95604 372 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 PPP1R10Q96QC0 940 aaKnown RBP22.59■■□□□ 1.21
CLN3-240ENST00000631023 CXCL16Q9H2A7 254 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 THEGQ9P2T0 379 aa22.59■■□□□ 1.21
CLN3-240ENST00000631023 ANK1P16157 1881 aa22.58■■□□□ 1.21
CLN3-240ENST00000631023 EIF3DO15371 548 aaKnown RBP eCLIP22.58■■□□□ 1.2
CLN3-240ENST00000631023 PRPF6O94906 941 aaKnown RBP22.58■■□□□ 1.2
CLN3-240ENST00000631023 PLPP4Q5VZY2 271 aa22.58■■□□□ 1.2
CLN3-240ENST00000631023 BCL7CQ8WUZ0 217 aaPredicted RBP22.58■■□□□ 1.2
CLN3-240ENST00000631023 HPS3Q969F9 1004 aa22.58■■□□□ 1.2
CLN3-240ENST00000631023 FGFBP2Q9BYJ0 223 aa22.58■■□□□ 1.2
CLN3-240ENST00000631023 TLE6Q9H808 572 aa22.58■■□□□ 1.2
CLN3-240ENST00000631023 RPF1Q9H9Y2 349 aaKnown RBP22.58■■□□□ 1.2
CLN3-240ENST00000631023 CNTN3Q9P232 1028 aa22.58■■□□□ 1.2
CLN3-240ENST00000631023 AGO2Q9UKV8 859 aaKnown RBP22.58■■□□□ 1.2
CLN3-240ENST00000631023 FSD2A1L4K1 749 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 CASTOR2A6NHX0 329 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 NAB2Q15742 525 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 SLC10A6Q3KNW5 377 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.57■■□□□ 1.2
CLN3-240ENST00000631023 CCDC47Q96A33 483 aaKnown RBP22.57■■□□□ 1.2
CLN3-240ENST00000631023 UROC1Q96N76 676 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 PRDM6Q9NQX0 595 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 EXOC1Q9NV70 894 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 MARCH5Q9NX47 278 aa22.57■■□□□ 1.2
CLN3-240ENST00000631023 TADA2AO75478 443 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 CXCL14O95715 111 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 CXCL8P10145 99 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 PPP2R3AQ06190 1150 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 EHHADHQ08426 723 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 PSMD2Q13200 908 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 HSP90AA2PQ14568 343 aaPredicted RBP22.56■■□□□ 1.2
CLN3-240ENST00000631023 MRPL43Q8N983 215 aaKnown RBP22.56■■□□□ 1.2
CLN3-240ENST00000631023 TMEM87AQ8NBN3 555 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 PABPC5Q96DU9 382 aaKnown RBP22.56■■□□□ 1.2
CLN3-240ENST00000631023 TSPAN18Q96SJ8 248 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 IGFLR1Q9H665 355 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 ADAM28Q9UKQ2 775 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 PCDHGC5Q9Y5F6 944 aa22.56■■□□□ 1.2
CLN3-240ENST00000631023 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.56■■□□□ 1.2
CLN3-240ENST00000631023 TISP43B9A030 160 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 FAM189A1O60320 539 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 CTSAP10619 480 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 CA8P35219 290 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 TNFSF9P41273 254 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 HYAL1Q12794 435 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 AAK1Q2M2I8 961 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 RBM23Q86U06 439 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 CD302Q8IX05 232 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 ZNF507Q8TCN5 953 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 ATXN2LQ8WWM7 1075 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 DDX27Q96GQ7 796 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 CDCA3Q99618 268 aaPredicted RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 ZBP1Q9H171 429 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 CPSF3Q9UKF6 684 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 UBE4BO95155 1302 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 TTC26A0AVF1 554 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 LDHAP00338 332 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 GARTP22102 1010 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 ADSSP30520 456 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 NRIP1P48552 1158 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 POU5F1Q01860 360 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 FAM160A1Q05DH4 1040 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 EP400NLQ6ZTU2 488 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 EPM2AIP1Q7L775 607 aaPredicted RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 ADGRD2Q7Z7M1 963 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 ZMAT2Q96NC0 199 aaKnown RBP22.55■■□□□ 1.2
CLN3-240ENST00000631023 IKZF4Q9H2S9 585 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 SLC39A2Q9NP94 309 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 SSX2IPQ9Y2D8 614 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 IRAK3Q9Y616 596 aa22.55■■□□□ 1.2
CLN3-240ENST00000631023 UNC80Q8N2C7 3258 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 C2orf71A6NGG8 1288 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 KLRC4O43908 158 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 SOD2P04179 222 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 ACOT2P49753 483 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 ENOX2Q16206 610 aaKnown RBP22.54■■□□□ 1.2
CLN3-240ENST00000631023 KMT5BQ4FZB7 885 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 FUT10Q6P4F1 479 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms