RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ITIH3Q06033 890 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 GRIK3Q13003 919 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 CUL4BQ13620 913 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 MCM6Q14566 821 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 DCAF4L1Q3SXM0 396 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 TMEM31Q5JXX7 168 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 RINT1Q6NUQ1 792 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 LLGL2Q6P1M3 1020 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 SYCE2Q6PIF2 218 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 SASS6Q6UVJ0 657 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 C1orf186Q6ZWK4 172 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 CDR2LQ86X02 465 aaPredicted RBP13.86□□□□□ -0.19
PNKP-217ENST00000625216 GPR65Q8IYL9 337 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 GSTCDQ8NEC7 633 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 LARP4BQ92615 738 aaKnown RBP13.86□□□□□ -0.19
PNKP-217ENST00000625216 KHSRPQ92945 711 aaKnown RBP eCLIP13.86□□□□□ -0.19
PNKP-217ENST00000625216 ZFP42Q96MM3 310 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 RPS6KC1Q96S38 1066 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 NTPCRQ9BSD7 190 aaKnown RBP13.86□□□□□ -0.19
PNKP-217ENST00000625216 BLZF1Q9H2G9 400 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 PDZD7Q9H5P4 517 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 TMEM134Q9H6X4 195 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 MRPL17Q9NRX2 175 aaKnown RBP13.86□□□□□ -0.19
PNKP-217ENST00000625216 DZANK1Q9NVP4 752 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 MIOSQ9NXC5 875 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 KCND2Q9NZV8 630 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 MAN1B1Q9UKM7 699 aa13.86□□□□□ -0.19
PNKP-217ENST00000625216 PLXNA4Q9HCM2 1894 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 BIN1O00499 593 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 DCXO43602 365 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 LILRB3O75022 631 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 HIP1RO75146 1068 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 NPTX2P47972 431 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 PEX3P56589 373 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 DMP1Q13316 513 aaPredicted RBP13.85□□□□□ -0.19
PNKP-217ENST00000625216 PTPN14Q15678 1187 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 STX1AQ16623 288 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 NT5DC1Q5TFE4 455 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 CES5AQ6NT32 575 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 C11orf57Q6ZUT1 292 aaPredicted RBP13.85□□□□□ -0.19
PNKP-217ENST00000625216 SYT2Q8N9I0 419 aaPredicted RBP13.85□□□□□ -0.19
PNKP-217ENST00000625216 SPATA20Q8TB22 786 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 SMARCE1Q969G3 411 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 VN1R3Q9BXE9 311 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 RBSNQ9H1K0 784 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 ADAM7Q9H2U9 754 aa13.85□□□□□ -0.19
PNKP-217ENST00000625216 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
PNKP-217ENST00000625216 PRG3Q9Y2Y8 225 aaPredicted RBP13.85□□□□□ -0.19
PNKP-217ENST00000625216 TTLL13PA6NNM8 815 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 CCDC169A6NNP5 214 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 LOC730098B7Z3J9 87 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 EFEMP2O95967 443 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 C1RP00736 705 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 URODP06132 367 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 DHX8Q14562 1220 aaKnown RBP13.84□□□□□ -0.19
PNKP-217ENST00000625216 CBX2Q14781 532 aaPredicted RBP13.84□□□□□ -0.19
PNKP-217ENST00000625216 ATF7IP2Q5U623 682 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 RNF168Q8IYW5 571 aaPredicted RBP13.84□□□□□ -0.19
PNKP-217ENST00000625216 DAW1Q8N136 415 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 SLC22A17Q8WUG5 538 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 SPIRE2Q8WWL2 714 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 AUTS2Q8WXX7 1259 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 CCDC34Q96HJ3 373 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 NECTIN4Q96NY8 510 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 KLHL5Q96PQ7 755 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 KIFC3Q9BVG8 833 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 RUSC1Q9BVN2 902 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 HERC2P3Q9BVR0 1158 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 POLD4Q9HCU8 107 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 KMT5AQ9NQR1 393 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 MARCH5Q9NX47 278 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 SNTG2Q9NY99 539 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 KLK14Q9P0G3 267 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 ARHGAP28Q9P2N2 729 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 DPP7Q9UHL4 492 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 TNFSF13BQ9Y275 285 aa13.84□□□□□ -0.19
PNKP-217ENST00000625216 MYMKA6NI61 221 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 KLRC4O43908 158 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 THP07101 528 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 PLA2G4BP0C869 781 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 BMP6P22004 513 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 KLRC2P26717 231 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 MTHFRP42898 656 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 SMTNP53814 917 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 NLRP12P59046 1061 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 MAPK7Q13164 816 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 TUSC3Q13454 348 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 DPCR1Q3MIW9 517 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 ANO6Q4KMQ2 910 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 HERC4Q5GLZ8 1057 aaPredicted RBP13.83□□□□□ -0.2
PNKP-217ENST00000625216 ISM2Q6H9L7 571 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 RNF135Q8IUD6 432 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 RIPOR3Q96MK2 946 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 LRFN3Q9BTN0 628 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 MRPL4Q9BYD3 311 aaKnown RBP13.83□□□□□ -0.2
PNKP-217ENST00000625216 TRIM9Q9C026 710 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 DNAJC25Q9H1X3 360 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 RXFP1Q9HBX9 757 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 CHST7Q9NS84 486 aa13.83□□□□□ -0.2
PNKP-217ENST00000625216 ATG2AQ2TAZ0 1938 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms