RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 UVSSAQ2YD98 709 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 FAM171A1Q5VUB5 890 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 DCLRE1AQ6PJP8 1040 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 DTHD1Q6ZMT9 781 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 C4orf32Q8N8J7 132 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 BSNDQ8WZ55 320 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 DDX27Q96GQ7 796 aaKnown RBP13.1□□□□□ -0.31
UPF3B-204ENST00000619445 CCDC94Q9BW85 323 aaPredicted RBP13.1□□□□□ -0.31
UPF3B-204ENST00000619445 MRPL4Q9BYD3 311 aaKnown RBP13.1□□□□□ -0.31
UPF3B-204ENST00000619445 TMEM134Q9H6X4 195 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 KCND2Q9NZV8 630 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 FBXW11Q9UKB1 542 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 FAM186AA6NE01 2351 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 TRIP11Q15643 1979 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 CITO14578 2027 aa13.1□□□□□ -0.31
UPF3B-204ENST00000619445 CASTOR2A6NHX0 329 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 PROB1E7EW31 1015 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 RFPL2O75678 378 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 KIF4AO95239 1232 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 PDGFBP01127 241 aaPredicted RBP13.09□□□□□ -0.31
UPF3B-204ENST00000619445 LIG1P18858 919 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 AOC1P19801 751 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 SCP2P22307 547 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 CEP57Q86XR8 500 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 ZNF707Q96C28 371 aaPredicted RBP13.09□□□□□ -0.31
UPF3B-204ENST00000619445 UPF2Q9HAU5 1272 aaKnown RBP13.09□□□□□ -0.31
UPF3B-204ENST00000619445 MYH11P35749 1972 aa13.09□□□□□ -0.31
UPF3B-204ENST00000619445 CCDC169A6NNP5 214 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 F8W810 466 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 H0YCG3 227 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 SLC26A4O43511 780 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 B3GAT3O94766 335 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 SRFP11831 508 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 LAMP2P13473 410 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 RFX1P22670 979 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 GRM5P41594 1212 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 NPTX2P47972 431 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 MCM2P49736 904 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 SMTNP53814 917 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 NAB2Q15742 525 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 RTP2Q5QGT7 225 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 PPM1LQ5SGD2 360 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 ANKS3Q6ZW76 656 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 FLCNQ8NFG4 579 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 LNX1Q8TBB1 728 aaPredicted RBP13.08□□□□□ -0.31
UPF3B-204ENST00000619445 B3GALT6Q96L58 329 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 PPP1R10Q96QC0 940 aaKnown RBP13.08□□□□□ -0.31
UPF3B-204ENST00000619445 CLSTN3Q9BQT9 956 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 ARHGAP28Q9P2N2 729 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 GDAQ9Y2T3 454 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 BACE2Q9Y5Z0 518 aa13.08□□□□□ -0.31
UPF3B-204ENST00000619445 TTLL13PA6NNM8 815 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SPATA31D3P0C874 917 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 MCF2P10911 925 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 FGFR3P22607 806 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 FSHRP23945 695 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 GUCY2CP25092 1073 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 PEX3P56589 373 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 STRN3Q13033 797 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 RAB33AQ14088 237 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ECM1Q16610 540 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ZNF568Q3ZCX4 644 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 NT5DC1Q5TFE4 455 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 EEF1DP3Q658K8 133 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ARL6IP4Q66PJ3 421 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 PRSS55Q6UWB4 352 aaPredicted RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SPATA31D4Q6ZUB0 917 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 MTSS1LQ765P7 747 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 GLYCTKQ8IVS8 523 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 TMEM105Q8N8V8 129 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SPIRE2Q8WWL2 714 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 KIF2CQ99661 725 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ACO2Q99798 780 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 PAAF1Q9BRP4 392 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 NTPCRQ9BSD7 190 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 MTRRQ9UBK8 725 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 PCDHB6Q9Y5E3 794 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 VWA8A3KMH1 1905 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 ANHXE9PGG2 379 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 H0Y858 1186 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 GFRA3O60609 400 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 N4BP1O75113 896 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 HIP1RO75146 1068 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 C8AP07357 584 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 RPL17P18621 184 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 RPL9P32969 192 aaKnown RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 NBL1P41271 181 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 TOB1P50616 345 aaPredicted RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 UPP1Q16831 310 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 XKR4Q5GH76 650 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 HYIQ5T013 277 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 MCTP1Q6DN14 999 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 RINT1Q6NUQ1 792 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 GET4Q7L5D6 327 aaPredicted RBP13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SIX5Q8N196 739 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 SLC44A3Q8N4M1 653 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 HASPINQ8TF76 798 aa13.07□□□□□ -0.32
UPF3B-204ENST00000619445 RABGGTAQ92696 567 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms