RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 APOEP02649 317 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 SMARCA1P28370 1054 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 CHRNA5P30532 468 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 POU5F1BQ06416 359 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 XKR3Q5GH77 459 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 ST13P4Q8IZP2 240 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 CXorf38Q8TB03 319 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 FAM118BQ9BPY3 351 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 ERP44Q9BS26 406 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 FSD1LQ9BXM9 530 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 TSPYL2Q9H2G4 693 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 NAGPAQ9UK23 515 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 ARL2BPQ9Y2Y0 163 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 PPFIA2O75334 1257 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 CHEK2O96017 543 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 TMEM253P0C7T8 217 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 H2AFXP16104 143 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 NTRK3Q16288 839 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 P3H1Q32P28 736 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 GJB7Q6PEY0 223 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 CATSPER3Q86XQ3 398 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 SCN4BQ8IWT1 228 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 C4orf33Q8N1A6 199 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 XAB2Q9HCS7 855 aaKnown RBP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 GTSE1Q9NYZ3 720 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 GPR75-ASB3A0A0A6YYF3 556 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 NVLO15381 856 aaKnown RBP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 ITIH2P19823 946 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 RAD23BP54727 409 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 ACTR2P61160 394 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 KIF19Q2TAC6 998 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 PLA2G4FQ68DD2 849 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 XPO6Q96QU8 1125 aaKnown RBP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 MKNK1Q9BUB5 465 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 APRTP07741 180 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 EFNA5P52803 228 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 TTLL4Q14679 1199 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 EPC2Q52LR7 807 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 RFX8Q6ZV50 586 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 SPATA33Q96N06 139 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 TSC22D3Q99576 134 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 OSBPL8Q9BZF1 889 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 MAD2L2Q9UI95 211 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 NR3C2P08235 984 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 TAC1P20366 129 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 ADORA2BP29275 332 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 COPB2P35606 906 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 NPEPPSP55786 919 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 ST3GAL1Q11201 340 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 TTI2Q6NXR4 508 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 LRIG3Q6UXM1 1119 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 ACAD11Q709F0 780 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 CYFIP2Q96F07 1278 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 FAM96AQ9H5X1 160 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 SUN2Q9UH99 717 aa14.82□□□□□ -0.04
CPSF1-212ENST00000616140 DMGDHQ9UI17 866 aaKnown RBP14.82□□□□□ -0.04
CPSF1-212ENST00000616140 INO80Q9ULG1 1556 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 ATP8B3O60423 1300 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 HSPA8P11142 646 aaKnown RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PAMP19021 973 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 AP1B1Q10567 949 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 MTMR2Q13614 643 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 NCOA4Q13772 614 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 MORF4L2Q15014 288 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PID1Q7Z2X4 250 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 LINC00116Q8NCU8 138 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 LBHD1Q9BQE6 289 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 AGXT2Q9BYV1 514 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 YIPF3Q9GZM5 350 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 LRFN2Q9ULH4 789 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 L1RE1Q9UN81 338 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 CYP11B2P19099 503 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PAPOLAP51003 745 aaKnown RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 SESN2P58004 480 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 YWHAHQ04917 246 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 HABP4Q5JVS0 413 aaKnown RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 HHIPL2Q6UWX4 724 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 CDC26Q8NHZ8 85 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 KIF12Q96FN5 646 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 ISCUQ9H1K1 167 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 KBTBD4Q9NVX7 518 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 ZBTB12Q9Y330 459 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PCDHB2Q9Y5E7 798 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PPRC1Q5VV67 1664 aaKnown RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 PIK3R2O00459 728 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 GSTA4O15217 222 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 AP3M2P53677 418 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 TAP1Q03518 808 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 TMEM259Q4ZIN3 620 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 RABGAP1LQ5R372 815 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 RBBP8NLQ8NC74 664 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-212ENST00000616140 AGR3Q8TD06 166 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 OTUD5Q96G74 571 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 DNAJC7Q99615 494 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 TEX13BQ9BXU2 312 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 VCPKMTQ9H867 229 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 KRT82Q9NSB4 513 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 KCND2Q9NZV8 630 aa14.81□□□□□ -0.04
CPSF1-212ENST00000616140 NME3Q13232 169 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms