RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 NXF1Q9UBU9 619 aaKnown RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 COG5Q9UP83 839 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PCDHA2Q9Y5H9 948 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 MAPK13O15264 365 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 SLC26A4O43511 780 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 C21orf2O43822 256 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CDC25CP30307 473 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 FAM160B2Q86V87 743 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CPNE8Q86YQ8 564 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 C3orf20Q8ND61 904 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 TRIM11Q96F44 468 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PRMT6Q96LA8 375 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 CHST7Q9NS84 486 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 GINM1Q9NU53 330 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 ZHX2Q9Y6X8 837 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PKD1L3Q7Z443 1732 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 ATP6V1G2O95670 118 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 RRM1P23921 792 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CHRNA5P30532 468 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CLK2P49760 499 aaKnown RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 ARSEP51690 589 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PDIA2Q13087 525 aaKnown RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 MORC4Q8TE76 937 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PYROXD1Q8WU10 500 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 GTF3C4Q9UKN8 822 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CDH16O75309 829 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 SKAP2O75563 359 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 DESP17661 470 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CNGA1P29973 690 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 PHBP35232 272 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 LMNB2Q03252 620 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 SWSAP1Q6NVH7 229 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 SCYL2Q6P3W7 929 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 AEBP2Q6ZN18 517 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 RHOT1Q8IXI2 618 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 EIF1ADQ8N9N8 165 aaKnown RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 PRCCQ92733 491 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 ZNF668Q96K58 619 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 RILPQ96NA2 401 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 MXRA8Q9BRK3 442 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 CALN1Q9BXU9 219 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 DNAJC18Q9H819 358 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 SIX2Q9NPC8 291 aa13.35□□□□□ -0.27
MSH6-213ENST00000614496 ZBTB12Q9Y330 459 aaPredicted RBP13.35□□□□□ -0.27
MSH6-213ENST00000614496 MYH3P11055 1940 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 DDX3YO15523 660 aaKnown RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 DKC1O60832 514 aaKnown RBP eCLIP13.34□□□□□ -0.27
MSH6-213ENST00000614496 KRT10P13645 584 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 PRUNE1Q86TP1 453 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 ATP6V0A1Q93050 837 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 RPS6KC1Q96S38 1066 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 TRABDQ9H4I3 376 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 GEMIN8Q9NWZ8 242 aaKnown RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 STAM2O75886 525 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 ANP32DO95626 131 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 GNA15P30679 374 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 MSH2P43246 934 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 TFAMQ00059 246 aaKnown RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 RCN2Q14257 317 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 RASGEF1CQ8N431 466 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 SPDL1Q96EA4 605 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 OSBPL8Q9BZF1 889 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 TRIM6Q9C030 488 aaPredicted RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 SLC12A6Q9UHW9 1150 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 CYP3A7-CYP3A51PA0A087WV96 503 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 WDR64B1ANS9 1081 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 NQO1P15559 274 aaKnown RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 CYP3A7P24462 503 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 AUHQ13825 339 aaKnown RBP13.34□□□□□ -0.27
MSH6-213ENST00000614496 VPS72Q15906 364 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 RFX8Q6ZV50 586 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 TTC17Q96AE7 1141 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 YY1AP1Q9H869 796 aa13.34□□□□□ -0.27
MSH6-213ENST00000614496 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.33□□□□□ -0.27
MSH6-213ENST00000614496 K7ERI5 159 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 COPS2P61201 443 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 ELF3P78545 371 aaPredicted RBP13.33□□□□□ -0.27
MSH6-213ENST00000614496 BSPRYQ5W0U4 402 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 CENPUQ71F23 418 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 RFX6Q8HWS3 928 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 PGM2Q96G03 612 aa13.33□□□□□ -0.27
MSH6-213ENST00000614496 ROPN1BQ9BZX4 212 aaPredicted RBP13.33□□□□□ -0.27
MSH6-213ENST00000614496 ROPN1Q9HAT0 212 aaPredicted RBP13.33□□□□□ -0.27
MSH6-213ENST00000614496 BAG2O95816 211 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 MAGEA4P43358 317 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 PSMC5P62195 406 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 KCNJ2P63252 427 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 DDR1Q08345 913 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 CCHCR1Q8TD31 782 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 TAF1P21675 1872 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 HOXD13P35453 343 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 FNTAP49354 379 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 RAD23BP54727 409 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 CDR2Q01850 454 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 SWT1Q5T5J6 900 aaKnown RBP13.33□□□□□ -0.28
MSH6-213ENST00000614496 STRIP1Q5VSL9 837 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 ACAD10Q6JQN1 1059 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 FOXR2Q6PJQ5 311 aa13.33□□□□□ -0.28
MSH6-213ENST00000614496 SLC17A8Q8NDX2 589 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms