RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TDRD10Q5VZ19 366 aaKnown RBP15.45■□□□□ 0.06
USP39-220ENST00000613444 TMTC1Q8IUR5 882 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 OR5B17Q8NGF7 314 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 VTI1AQ96AJ9 217 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 KCND1Q9NSA2 647 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 APEX2Q9UBZ4 518 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 TRPV2Q9Y5S1 764 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 NRDCO43847 1150 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 RPLP2P05387 115 aaKnown RBP15.44■□□□□ 0.06
USP39-220ENST00000613444 STAG3L1P0CL83 205 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 CCL5P13501 91 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 TNNI1P19237 187 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 AXLP30530 894 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 POU5F1Q01860 360 aaKnown RBP15.44■□□□□ 0.06
USP39-220ENST00000613444 CETN1Q12798 172 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 PTK7Q13308 1070 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 CYP26C1Q6V0L0 522 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 RSPH3Q86UC2 560 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 FAM228AQ86W67 206 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 FBXL13Q8NEE6 735 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 SYN2Q92777 582 aaPredicted RBP15.44■□□□□ 0.06
USP39-220ENST00000613444 DEFB118Q96PH6 123 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 OGDHLQ9ULD0 1010 aa15.44■□□□□ 0.06
USP39-220ENST00000613444 NOC2LQ9Y3T9 749 aaKnown RBP15.44■□□□□ 0.06
USP39-220ENST00000613444 DNM1LO00429 736 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 B4GALT4O60513 344 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 VNN1O95497 513 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 MYCP01106 439 aaPredicted RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 CLTAP09496 248 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 CXCL8P10145 99 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 HSPA8P11142 646 aaKnown RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 SCARA3Q6AZY7 606 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 NOTUMQ6P988 496 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 SLC27A1Q6PCB7 646 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 WDR49Q8IV35 697 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 EIF2AQ9BY44 585 aaKnown RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 OSBPL7Q9BZF2 842 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 GPR88Q9GZN0 384 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 RRAGDQ9NQL2 400 aaPredicted RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 STARD7Q9NQZ5 370 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 RAB20Q9NX57 234 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 AIPL1Q9NZN9 384 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 SLC10A6Q3KNW5 377 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 DCAF4L1Q3SXM0 396 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 HGSNATQ68CP4 663 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 TOGARAM2Q6ZUX3 1019 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 ARHGEF19Q8IW93 802 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 EFCAB13Q8IY85 973 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 RNF208Q9H0X6 261 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 NUCKS1Q9H1E3 243 aaKnown RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 RPF1Q9H9Y2 349 aaKnown RBP15.43■□□□□ 0.06
USP39-220ENST00000613444 SPTLC3Q9NUV7 552 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 MYO6Q9UM54 1294 aa15.43■□□□□ 0.06
USP39-220ENST00000613444 A0A0U1RQG5 324 aaPredicted RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 USP27XA6NNY8 438 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 KBTBD13C9JR72 458 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 CTSHP09668 335 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 GRM5P41594 1212 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 SURF1Q15526 300 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 KYAT1Q16773 422 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 UBXN11Q5T124 520 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 ADPGKQ9BRR6 497 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 TRPV6Q9H1D0 765 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 ARHGAP20Q9P2F6 1191 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 DNAJC12Q9UKB3 198 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 DAAM1Q9Y4D1 1078 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 M0QZ92 97 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 ARVCFO00192 962 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 TULP1O00294 542 aaPredicted RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 NPTXRO95502 500 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 PLEKP08567 350 aaPredicted RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 THPOP40225 353 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 CDK7P50613 346 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 NCBP1Q09161 790 aaKnown RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 TSR1Q2NL82 804 aaKnown RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 FAM26DQ5JW98 314 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 CCAR2Q8N163 923 aaKnown RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 STK33Q9BYT3 514 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 PIN4Q9Y237 131 aaKnown RBP15.42■□□□□ 0.06
USP39-220ENST00000613444 MROH7Q68CQ1 1323 aa15.42■□□□□ 0.06
USP39-220ENST00000613444 LACTBL1A8MY62 500 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 IL18RAPO95256 599 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 HLA-DRAP01903 254 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 RFX1P22670 979 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 AP3M2P53677 418 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 SFMBT2Q5VUG0 894 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 IRF2BP2Q7Z5L9 587 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 CTU1Q7Z7A3 348 aaKnown RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 GPIHBP1Q8IV16 184 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 HELQQ8TDG4 1101 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 FAM212AQ96EL1 285 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 MTMR12Q9C0I1 747 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 ZNHIT6Q9NWK9 470 aaKnown RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 F8VZ95 297 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 MNX1P50219 401 aaPredicted RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 RAPGEF1Q13905 1077 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 DRAP1Q14919 205 aaPredicted RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 TRAF7Q6Q0C0 670 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 KAT5Q92993 513 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 ELMO3Q96BJ8 720 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms