RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 GIT1Q9Y2X7 761 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 RWDD3Q9Y3V2 267 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 IPPQ9Y573 584 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 COL4A6Q14031 1691 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 MYO9BQ13459 2157 aa10.97□□□□□ -0.65
UPF1-213ENST00000601981 KIAA1671Q9BY89 1806 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 ITIH6Q6UXX5 1313 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 TBKBP1A7MCY6 615 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 DGKIO75912 1065 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 LDHAP00338 332 aaKnown RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 GARTP22102 1010 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 PROZP22891 400 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 PBX1P40424 430 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 CASP5P51878 434 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 HTRA4P83105 476 aaPredicted RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 MCL1Q07820 350 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 BTG3Q14201 252 aaPredicted RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 KNOP1Q1ED39 458 aaKnown RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 BMT2Q1RMZ1 405 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 EEF1DP3Q658K8 133 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 SPECC1LQ69YQ0 1117 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 ARMCX5Q6P1M9 558 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 EPM2AIP1Q7L775 607 aaPredicted RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 ZBTB33Q86T24 672 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 ZNF598Q86UK7 904 aaKnown RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 CDR2LQ86X02 465 aaPredicted RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 LRRC8AQ8IWT6 810 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 CMTR2Q8IYT2 770 aaKnown RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 LRRC43Q8N309 656 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 CACTINQ8WUQ7 758 aaKnown RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 ZNF830Q96NB3 372 aaPredicted RBP10.96□□□□□ -0.65
UPF1-213ENST00000601981 MSTO1Q9BUK6 570 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 APOL6Q9BWW8 343 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 CDT1Q9H211 546 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 KANSL3Q9P2N6 904 aa10.96□□□□□ -0.65
UPF1-213ENST00000601981 TMEM265A0A087WTH1 108 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 TTLL13PA6NNM8 815 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 LGALS16A8MUM7 142 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 OGTO15294 1046 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 CALUO43852 315 aaPredicted RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 EDN1P05305 212 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 TPM2P07951 284 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 CLTAP09496 248 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 FGFR1P11362 822 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 CLCN1P35523 988 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 GRM5P41594 1212 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 RNASELQ05823 741 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 TBX2Q13207 712 aaPredicted RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 SPOUT1Q5T280 376 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 LRRC55Q6ZSA7 311 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 NELFCDQ8IXH7 590 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 ZC3H3Q8IXZ2 948 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 THNSL1Q8IYQ7 743 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 FIBCD1Q8N539 461 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 SMG8Q8ND04 991 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 GLIS3Q8NEA6 775 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 HELQQ8TDG4 1101 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 SCFD1Q8WVM8 642 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 CNOT6LQ96LI5 555 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 ACAP3Q96P50 834 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 FAM193BQ96PV7 902 aaPredicted RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 FGFBP2Q9BYJ0 223 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 NXF3Q9H4D5 531 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 SLC28A3Q9HAS3 691 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 PTPRHQ9HD43 1115 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 AAASQ9NRG9 546 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 TYW1Q9NV66 732 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 TAB2Q9NYJ8 693 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 AGO2Q9UKV8 859 aaKnown RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 INPP5FQ9Y2H2 1132 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 USP20Q9Y2K6 914 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.95□□□□□ -0.66
UPF1-213ENST00000601981 ANK1P16157 1881 aa10.95□□□□□ -0.66
UPF1-213ENST00000601981 A0A0B4J269 797 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 GRXCR1A8MXD5 290 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 PDXKO00764 312 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 TEX33O43247 280 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 NRDCO43847 1150 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 ATF7P17544 494 aaPredicted RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 DNAJB2P25686 324 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 RABGGTBP53611 331 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 CCZ1BP86790 482 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 CCZ1P86791 482 aaPredicted RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 PPP2R3AQ06190 1150 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 KCNA1Q09470 495 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 LRMPQ12912 555 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 EDRF1Q3B7T1 1238 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 PAN2Q504Q3 1202 aaKnown RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 NOMO2Q5JPE7 1267 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 PPP2R2DQ66LE6 453 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 TMCO2Q7Z6W1 182 aaPredicted RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 CRIPAKQ8N1N5 446 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 CCDC112Q8NEF3 446 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 LPPQ93052 612 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 TIFAQ96CG3 184 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 ZNF689Q96CS4 500 aaPredicted RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 ZBTB45Q96K62 511 aaPredicted RBP10.94□□□□□ -0.66
UPF1-213ENST00000601981 CEP63Q96MT8 703 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 SAMD11Q96NU1 681 aa10.94□□□□□ -0.66
UPF1-213ENST00000601981 PBX4Q9BYU1 374 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms