RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CXCL8P10145 99 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 TRIM21P19474 475 aaKnown RBP16.73■□□□□ 0.27
UPF1-206ENST00000598471 CLDN10P78369 228 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 MLLT1Q03111 559 aaPredicted RBP16.73■□□□□ 0.27
UPF1-206ENST00000598471 PPP3CAQ08209 521 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 FAAP100Q0VG06 881 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 C1orf220Q5T0J3 134 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 UBXN11Q5T124 520 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 LSM14BQ9BX40 385 aaKnown RBP16.73■□□□□ 0.27
UPF1-206ENST00000598471 FTHL17Q9BXU8 183 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 IFIH1Q9BYX4 1025 aaKnown RBP16.73■□□□□ 0.27
UPF1-206ENST00000598471 PLEKHA5Q9HAU0 1116 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 TMEM39AQ9NV64 488 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 SNTG2Q9NY99 539 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 SIK3Q9Y2K2 1263 aa16.73■□□□□ 0.27
UPF1-206ENST00000598471 TNNC2P02585 160 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TMEM191BP0C7N4 346 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 BIRC3Q13489 604 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 PTPN21Q16825 1174 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 DUOXA2Q1HG44 320 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CBWD6Q4V339 395 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 FIGNQ5HY92 759 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CBWD3Q5JTY5 395 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CBWD5Q5RIA9 395 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 NT5DC4Q86YG4 428 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TMEM192Q8IY95 271 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CCDC150Q8NCX0 1101 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CACTINQ8WUQ7 758 aaKnown RBP16.72■□□□□ 0.27
UPF1-206ENST00000598471 APBB2Q92870 758 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 ANKRD36BP1Q96IX9 119 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TSPAN18Q96SJ8 248 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 CRACR2AQ9BSW2 395 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TRAIPQ9BWF2 469 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TMEM117Q9H0C3 514 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 NXF3Q9H4D5 531 aaKnown RBP16.72■□□□□ 0.27
UPF1-206ENST00000598471 FAM105AQ9NUU6 356 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 DAAM1Q9Y4D1 1078 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 IPPQ9Y573 584 aa16.72■□□□□ 0.27
UPF1-206ENST00000598471 TTC26A0AVF1 554 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 PHACTR2O75167 634 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 TBX2Q13207 712 aaPredicted RBP16.71■□□□□ 0.27
UPF1-206ENST00000598471 DSC3Q14574 896 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 MBTPS1Q14703 1052 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 LRRC26Q2I0M4 334 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 SLC10A6Q3KNW5 377 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 SV2AQ7L0J3 742 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 CNGA4Q8IV77 575 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 FBXL13Q8NEE6 735 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 ZNF397Q8NF99 534 aaPredicted RBP16.71■□□□□ 0.27
UPF1-206ENST00000598471 SEPT8Q92599 483 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 SNX27Q96L92 541 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 POP1Q99575 1024 aaKnown RBP16.71■□□□□ 0.27
UPF1-206ENST00000598471 ADAM2Q99965 735 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 APOL6Q9BWW8 343 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 PPP1R12CQ9BZL4 782 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 EDEM3Q9BZQ6 932 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 INTS2Q9H0H0 1204 aaKnown RBP16.71■□□□□ 0.27
UPF1-206ENST00000598471 PLCB1Q9NQ66 1216 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 FAM207AQ9NSI2 230 aaPredicted RBP16.71■□□□□ 0.27
UPF1-206ENST00000598471 PARP2Q9UGN5 583 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 TBX21Q9UL17 535 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 DERAQ9Y315 318 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 PCDHB2Q9Y5E7 798 aa16.71■□□□□ 0.27
UPF1-206ENST00000598471 A0A1W2PQJ5 194 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 LACTBL1A8MY62 500 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 AKR1B15C9JRZ8 316 aaPredicted RBP16.7■□□□□ 0.26
UPF1-206ENST00000598471 NRDCO43847 1150 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 RECQL4O94761 1208 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 ITGA4P13612 1032 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 PON1P27169 355 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 TFAMQ00059 246 aaKnown RBP16.7■□□□□ 0.26
UPF1-206ENST00000598471 KCNMA1Q12791 1236 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 ZACNQ401N2 412 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 LMBRD2Q68DH5 695 aaPredicted RBP16.7■□□□□ 0.26
UPF1-206ENST00000598471 CCDC186Q7Z3E2 898 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 CACNA2D4Q7Z3S7 1137 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 EHBP1Q8NDI1 1231 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 PGBD4Q96DM1 585 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 TRIM44Q96DX7 344 aaPredicted RBP16.7■□□□□ 0.26
UPF1-206ENST00000598471 TMX1Q9H3N1 280 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 C1orf112Q9NSG2 853 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 COQ4Q9Y3A0 265 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 C2CD2Q9Y426 696 aa16.7■□□□□ 0.26
UPF1-206ENST00000598471 XPOTO43592 962 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 ZNF623O75123 536 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 C4BPAP04003 597 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 GYPCP04921 128 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 RFX1P22670 979 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 RFC2P35250 354 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 PIK3CAP42336 1068 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 KLK7P49862 253 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 WNT7BP56706 349 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 TMEM132DQ14C87 1099 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 TSR1Q2NL82 804 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 EPC2Q52LR7 807 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 JADE1Q6IE81 842 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 TRIM65Q6PJ69 517 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 C15orf39Q6ZRI6 1047 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 SMG8Q8ND04 991 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 DPF3Q92784 378 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms