RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 LILRB3O75022 631 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 SOD2P04179 222 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 KCNE1P15382 129 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 OR1G1P47890 313 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 PTPN14Q15678 1187 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 ZBTB33Q86T24 672 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 GPR65Q8IYL9 337 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 DHX58Q96C10 678 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 PAAF1Q9BRP4 392 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 ZHX3Q9H4I2 956 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 CLEC1BQ9P126 229 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 HPSEQ9Y251 543 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 A0A0B4J269 797 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 POLR2DO15514 142 aaKnown RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ADRB2P07550 413 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 LIG4P49917 911 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 YARSP54577 528 aaKnown RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 EHHADHQ08426 723 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 HSP90AA2PQ14568 343 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 SLC10A6Q3KNW5 377 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ZC2HC1CQ53FD0 456 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ADALQ6DHV7 355 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 SMRP1Q8NCR6 262 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 MICAL1Q8TDZ2 1067 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 SPATA32Q96LK8 384 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ZMAT2Q96NC0 199 aaKnown RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ACAP3Q96P50 834 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 PYM1Q9BRP8 204 aaKnown RBP17.64■□□□□ 0.41
TRIM28-213ENST00000598355 TCHPQ9BT92 498 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 LRRC27Q9C0I9 530 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 CHST7Q9NS84 486 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 FAM13BQ9NYF5 915 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 CACNG4Q9UBN1 327 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 ADAM28Q9UKQ2 775 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 C2orf16Q68DN1 1984 aa17.64■□□□□ 0.41
TRIM28-213ENST00000598355 SMIM28A0A1B0GU29 152 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 TTC26A0AVF1 554 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 H3BQ06 376 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-213ENST00000598355 PER2O15055 1255 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 NR1I2O75469 434 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 KIF4AO95239 1232 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 CMA1P23946 247 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 CASP5P51878 434 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 COASYQ13057 564 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 ALCAMQ13740 583 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 KYAT1Q16773 422 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 PUS10Q3MIT2 529 aaKnown RBP17.63■□□□□ 0.41
TRIM28-213ENST00000598355 GLRA4Q5JXX5 417 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 FUT10Q6P4F1 479 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 RBM23Q86U06 439 aaKnown RBP17.63■□□□□ 0.41
TRIM28-213ENST00000598355 BICD1Q96G01 975 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 C7orf25Q9BPX7 421 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 COLEC11Q9BWP8 271 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 FGFBP2Q9BYJ0 223 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 SCAND2PQ9GZW5 306 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-213ENST00000598355 PANK4Q9NVE7 773 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 KCNH3Q9ULD8 1083 aa17.63■□□□□ 0.41
TRIM28-213ENST00000598355 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 GRXCR2A6NFK2 248 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 CASTOR2A6NHX0 329 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 OGTO15294 1046 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 ACTN4O43707 911 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 CLASP2O75122 1294 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 CLTAP09496 248 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 IDEP14735 1019 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 OSTNP61366 133 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 NUCB2P80303 420 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 RBM10P98175 930 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 AMPD3Q01432 767 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 DSG1Q02413 1049 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 SOX4Q06945 474 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 BMS1Q14692 1282 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 L1TD1Q5T7N2 865 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 CCDC65Q8IXS2 484 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 ADAMTS19Q8TE59 1207 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 AUTS2Q8WXX7 1259 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 STAMQ92783 540 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 UROC1Q96N76 676 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 GPR62Q9BZJ7 368 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 IGFLR1Q9H665 355 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 MRPL44Q9H9J2 332 aaKnown RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 PLEKHA5Q9HAU0 1116 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 BARX2Q9UMQ3 279 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-213ENST00000598355 HCFC2Q9Y5Z7 792 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 TSC2P49815 1807 aa17.62■□□□□ 0.41
TRIM28-213ENST00000598355 A0A1W2PQ27 194 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 A0A1W2PQ64 194 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 A0A1W2PQD8 194 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 ANKRD63C9JTQ0 380 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 CXCL14O95715 111 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 CXCL8P10145 99 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 HARSP12081 509 aaKnown RBP17.61■□□□□ 0.41
TRIM28-213ENST00000598355 PFKFB1P16118 471 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 TNFSF9P41273 254 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 NDUFV1P49821 464 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 POU5F1Q01860 360 aaKnown RBP17.61■□□□□ 0.41
TRIM28-213ENST00000598355 KCNA1Q09470 495 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 SMAD4Q13485 552 aaKnown RBP17.61■□□□□ 0.41
TRIM28-213ENST00000598355 UPP1Q16831 310 aa17.61■□□□□ 0.41
TRIM28-213ENST00000598355 HERC4Q5GLZ8 1057 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms