RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GPRC5CQ9NQ84 441 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 ZNF292O60281 2723 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 A0A087WWV3 80 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 CASTOR2A6NHX0 329 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 PTGESO14684 152 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 XYLBO75191 536 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 KIF4AO95239 1232 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 C8AP07357 584 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 DCNP07585 359 aaKnown RBP13.81□□□□□ -0.2
TRIM28-212ENST00000597995 SP9P0CG40 484 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 ATP2B1P20020 1258 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 GPC5P78333 572 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 PRPF4BQ13523 1007 aaKnown RBP13.81□□□□□ -0.2
TRIM28-212ENST00000597995 RAB33AQ14088 237 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 TRIM29Q14134 588 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 NAB2Q15742 525 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 MAPK6Q16659 721 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 MTSS1LQ765P7 747 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 MAEAQ7L5Y9 396 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 CATSPER3Q86XQ3 398 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 CEP57Q86XR8 500 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 FBXO18Q8NFZ0 1043 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 PJA1Q8NG27 643 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 FGF14Q92915 247 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 BORCS6Q96GS4 357 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 C8orf76Q96K31 380 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 ADPGKQ9BRR6 497 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 POLR3CQ9BUI4 534 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-212ENST00000597995 RPP25Q9BUL9 199 aaKnown RBP13.81□□□□□ -0.2
TRIM28-212ENST00000597995 PDZD7Q9H5P4 517 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 SH2B1Q9NRF2 756 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-212ENST00000597995 SNTG2Q9NY99 539 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 CACNG4Q9UBN1 327 aa13.81□□□□□ -0.2
TRIM28-212ENST00000597995 WDR87Q6ZQQ6 2873 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 POTEMA6NI47 508 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 TMEM189-UBE2V1I3L0A0 370 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 ACKR2O00590 384 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 RECQL4O94761 1208 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 CYP11B2P19099 503 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 PRKCQQ04759 706 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 SPECC1Q5M775 1068 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 PARM1Q6UWI2 310 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-212ENST00000597995 HASPINQ8TF76 798 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 FGF13Q92913 245 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 DDX23Q9BUQ8 820 aaKnown RBP13.8□□□□□ -0.2
TRIM28-212ENST00000597995 KCNH3Q9ULD8 1083 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 R4GN57 208 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 CACNA1IQ9P0X4 2223 aa13.8□□□□□ -0.2
TRIM28-212ENST00000597995 TTLL13PA6NNM8 815 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 CCL16O15467 120 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 MED24O75448 989 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 PRKCBP05771 671 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 MUTP22033 750 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 FGFR3P22607 806 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 RPA1P27694 616 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 MCM7P33993 719 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 NAMPTP43490 491 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 NTHL1P78549 312 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 HMGN5P82970 282 aaKnown RBP13.79□□□□□ -0.2
TRIM28-212ENST00000597995 PFKPQ01813 784 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 PPP2R5AQ15172 486 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 RABEP1Q15276 862 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 TMEM132AQ24JP5 1023 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 DCAF4L1Q3SXM0 396 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 PADI6Q6TGC4 694 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 RSPO2Q6UXX9 243 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-212ENST00000597995 NOSTRINQ8IVI9 506 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 DEPTORQ8TB45 409 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 OSBPL6Q9BZF3 934 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 CCDC113Q9H0I3 377 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 FOXP1Q9H334 677 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-212ENST00000597995 FANCMQ8IYD8 2048 aa13.79□□□□□ -0.2
TRIM28-212ENST00000597995 CACNA1AO00555 2505 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 KANSL1LA0AUZ9 987 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 ADAM12O43184 909 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 GLULP15104 373 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 EFNA5P52803 228 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 ORC2Q13416 577 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-212ENST00000597995 SAFBQ15424 915 aaKnown RBP eCLIP13.78□□□□□ -0.2
TRIM28-212ENST00000597995 ZNF174Q15697 407 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 ZNF528Q3MIS6 628 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 SLC44A4Q53GD3 710 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 AXDND1Q5T1B0 1012 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-212ENST00000597995 ERMNQ8TAM6 284 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 SLC7A14Q8TBB6 771 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 BSNDQ8WZ55 320 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 RUBCNQ92622 972 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 FOXQ1Q9C009 403 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 CXCL16Q9H2A7 254 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 MTRRQ9UBK8 725 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 POLIQ9UNA4 740 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 BACE2Q9Y5Z0 518 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 OTOGLQ3ZCN5 2332 aa13.78□□□□□ -0.2
TRIM28-212ENST00000597995 VWA8A3KMH1 1905 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 ARHGEF35A5YM69 484 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 TRAPPC3O43617 180 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 B3GAT3O94766 335 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 OR1D2P34982 312 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 MAGEA9P43362 315 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms