RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 GIT2Q14161 759 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 KRT79Q5XKE5 535 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 LARP1BQ659C4 914 aaKnown RBP11.53□□□□□ -0.56
LIG1-213ENST00000596672 ZBTB33Q86T24 672 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 CABP7Q86V35 215 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 KREMEN2Q8NCW0 462 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 TMEM161BQ8NDZ6 487 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 RSAD2Q8WXG1 361 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 RIN2Q8WYP3 895 aaPredicted RBP11.53□□□□□ -0.56
LIG1-213ENST00000596672 MYADMQ96S97 322 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 TMEM134Q9H6X4 195 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 DZANK1Q9NVP4 752 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 SMC3Q9UQE7 1217 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 CLIC4Q9Y696 253 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 FAM186AA6NE01 2351 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 COL4A3Q01955 1670 aa11.52□□□□□ -0.56
LIG1-213ENST00000596672 F5P12259 2224 aa11.52□□□□□ -0.56
LIG1-213ENST00000596672 CCDC195A0A1B0GUA6 201 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 THP07101 528 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 PLA2G4BP0C869 781 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 SRGAP2BP0DMP2 458 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 MAPTP10636 758 aaKnown RBP11.52□□□□□ -0.57
LIG1-213ENST00000596672 FGFR3P22607 806 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 HOXD11P31277 338 aaPredicted RBP11.52□□□□□ -0.57
LIG1-213ENST00000596672 MTHFRP42898 656 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 BRCC3P46736 316 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 CLCNKBP51801 687 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 EFNA5P52803 228 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 SIGLEC14Q08ET2 396 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 RESTQ13127 1097 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 PPP2R5AQ15172 486 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 USP41Q3LFD5 358 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 SPECC1Q5M775 1068 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 ATAT1Q5SQI0 421 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 ZBTB41Q5SVQ8 909 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 FAM171A1Q5VUB5 890 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 CES5AQ6NT32 575 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 ZDHHC14Q8IZN3 488 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 CMASQ8NFW8 434 aaPredicted RBP11.52□□□□□ -0.57
LIG1-213ENST00000596672 C18orf25Q96B23 403 aaPredicted RBP11.52□□□□□ -0.57
LIG1-213ENST00000596672 IFT74Q96LB3 600 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 EMILIN2Q9BXX0 1053 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 SFXN1Q9H9B4 322 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 FNIP2Q9P278 1114 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 ARIH1Q9Y4X5 557 aaPredicted RBP11.52□□□□□ -0.57
LIG1-213ENST00000596672 CACNA1IQ9P0X4 2223 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 SCN1AP35498 2009 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 GPR179Q6PRD1 2367 aa11.52□□□□□ -0.57
LIG1-213ENST00000596672 H3BQV1 296 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 FAM189A1O60320 539 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 TADA2AO75478 443 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 GRM5P41594 1212 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 NTHL1P78549 312 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 TCF15Q12870 199 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 MCM6Q14566 821 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 KARSQ15046 597 aaKnown RBP11.51□□□□□ -0.57
LIG1-213ENST00000596672 SF3A1Q15459 793 aaKnown RBP11.51□□□□□ -0.57
LIG1-213ENST00000596672 UPP1Q16831 310 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 SLC10A6Q3KNW5 377 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 DCAF4L1Q3SXM0 396 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 ARL6IP4Q66PJ3 421 aaKnown RBP11.51□□□□□ -0.57
LIG1-213ENST00000596672 SLC39A4Q6P5W5 647 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 PPFIBP1Q86W92 1011 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 SPIRE2Q8WWL2 714 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 PIK3R5Q8WYR1 880 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 PBXIP1Q96AQ6 731 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 FAM122AQ96E09 287 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 EPSTI1Q96J88 318 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 SNX27Q96L92 541 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 RIPOR3Q96MK2 946 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 NECTIN4Q96NY8 510 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 REEP2Q9BRK0 252 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 NT5C3AQ9H0P0 336 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 KMT5AQ9NQR1 393 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 PHLPP2Q6ZVD8 1323 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 CFAP54Q96N23 3096 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 ZNF292O60281 2723 aa11.51□□□□□ -0.57
LIG1-213ENST00000596672 CARNS1A5YM72 827 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 TISP43B9A030 160 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 NARSO43776 548 aaKnown RBP11.5□□□□□ -0.57
LIG1-213ENST00000596672 TBC1D4O60343 1298 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 GLUD1P00367 558 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 ADH1AP07327 375 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 PLS3P13797 630 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 PLCG1P19174 1290 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 SYT1P21579 422 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 TKTP29401 623 aaKnown RBP11.5□□□□□ -0.57
LIG1-213ENST00000596672 TNFSF9P41273 254 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 NHLH1Q02575 133 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 SPAG1Q07617 926 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 ZNF568Q3ZCX4 644 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 SCARA3Q6AZY7 606 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 C15orf39Q6ZRI6 1047 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 CEP57Q86XR8 500 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 GPR65Q8IYL9 337 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 FBXL6Q8N531 539 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 DDX27Q96GQ7 796 aaKnown RBP11.5□□□□□ -0.57
LIG1-213ENST00000596672 CLIC6Q96NY7 704 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 TTPALQ9BTX7 342 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 RPP25Q9BUL9 199 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms