RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PUF60Q9UHX1 559 aaKnown RBP12.11□□□□□ -0.47
LIG1-211ENST00000596457 PCDHGC5Q9Y5F6 944 aa12.11□□□□□ -0.47
LIG1-211ENST00000596457 CASTOR2A6NHX0 329 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 PTGESO14684 152 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 IRS1P35568 1242 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 PPM1AP35813 382 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 TNFSF9P41273 254 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 SPAG1Q07617 926 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 MCL1Q07820 350 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 GRIK3Q13003 919 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 KMT5BQ4FZB7 885 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 PLPP4Q5VZY2 271 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 TMC7Q7Z402 723 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 NELFCDQ8IXH7 590 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 COLGALT2Q8IYK4 626 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 GSTCDQ8NEC7 633 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 RSPH1Q8WYR4 309 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 POMGNT1Q8WZA1 660 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 IGSF21Q96ID5 467 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 TMEM175Q9BSA9 504 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 LMAN2LQ9H0V9 348 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 PCIF1Q9H4Z3 704 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 ENTPD7Q9NQZ7 604 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 TLR9Q9NR96 1032 aa12.1□□□□□ -0.47
LIG1-211ENST00000596457 TOPORSQ9NS56 1045 aaPredicted RBP12.1□□□□□ -0.47
LIG1-211ENST00000596457 PRRC2BQ5JSZ5 2229 aaKnown RBP12.1□□□□□ -0.47
LIG1-211ENST00000596457 FAM237AA0A1B0GTK4 181 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 PVALEFA0A1B0GWK0 134 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 OGTO15294 1046 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 KLRC4O43908 158 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 PPP1R37O75864 691 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 PIGRP01833 764 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 RPN1P04843 607 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 CXCL8P10145 99 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 ACOT2P49753 483 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 ERVFC1P60507 584 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 PLCB3Q01970 1234 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 ALCAMQ13740 583 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 CAMK1Q14012 370 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 TCEAL5Q5H9L2 206 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 ZBTB41Q5SVQ8 909 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 SLFN12LQ6IEE8 588 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 CNNM4Q6P4Q7 775 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 RBM23Q86U06 439 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 TMEM173Q86WV6 379 aaPredicted RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 HASPINQ8TF76 798 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 BCL7CQ8WUZ0 217 aaPredicted RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 HLA-CQ95604 372 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 CCDC47Q96A33 483 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 CCDC34Q96HJ3 373 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 COLEC11Q9BWP8 271 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 STRA6Q9BX79 667 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 NSUN3Q9H649 340 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 TMEM206Q9H813 350 aa12.09□□□□□ -0.47
LIG1-211ENST00000596457 RPF1Q9H9Y2 349 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 AGO2Q9UKV8 859 aaKnown RBP12.09□□□□□ -0.47
LIG1-211ENST00000596457 PDCD11Q14690 1871 aaKnown RBP12.08□□□□□ -0.48
LIG1-211ENST00000596457 A0A0B4J269 797 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 SMIM28A0A1B0GU29 152 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 GOLGA8IPA6NC78 632 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 GOLGA8JA6NMD2 632 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 LACTBL1A8MY62 500 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 F8W810 466 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 INPPL1O15357 1258 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 PRPF40AO75400 957 aaKnown RBP12.08□□□□□ -0.48
LIG1-211ENST00000596457 TADA2AO75478 443 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 CLTAP09496 248 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 UBE3AQ05086 875 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 FAM160A1Q05DH4 1040 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 PPP2R3AQ06190 1150 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 DSC1Q08554 894 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 TUSC3Q13454 348 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 PNOCQ13519 176 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 POSTNQ15063 836 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 SLC10A6Q3KNW5 377 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 TIGD5Q53EQ6 642 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 KANK3Q6NY19 840 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 ARMCX5Q6P1M9 558 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 ADGRD2Q7Z7M1 963 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 FMR1NBQ8N0W7 255 aaPredicted RBP12.08□□□□□ -0.48
LIG1-211ENST00000596457 VPS52Q8N1B4 723 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 TMEM87AQ8NBN3 555 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 AUTS2Q8WXX7 1259 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 SAAL1Q96ER3 474 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 KIF12Q96FN5 646 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 TCF25Q9BQ70 676 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 PAAF1Q9BRP4 392 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 LRFN3Q9BTN0 628 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 GOLGA2P5Q9HBQ8 144 aa12.08□□□□□ -0.48
LIG1-211ENST00000596457 C2CD2LO14523 706 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 PER2O15055 1255 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 CLIC2O15247 247 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 EIF3DO15371 548 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG1-211ENST00000596457 NCK2O43639 380 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 CXCL14O95715 111 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 ANK1P16157 1881 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 GTF2F1P35269 517 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG1-211ENST00000596457 NRIP1P48552 1158 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 DPYDQ12882 1025 aa12.07□□□□□ -0.48
LIG1-211ENST00000596457 SNW1Q13573 536 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms