RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 BICD1Q96G01 975 aa19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 KLHL5Q96PQ7 755 aa19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 PHF7Q9BWX1 381 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 SFXN1Q9H9B4 322 aa19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 CHST7Q9NS84 486 aa19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 ANKFY1Q9P2R3 1169 aa19.42■□□□□ 0.7
SHKBP1-204ENST00000594862 NPHP3-ACAD11A0A0J9YXS1 232 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 CASTOR2A6NHX0 329 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 TMEM189-UBE2V1I3L0A0 370 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 SPTLC2O15270 562 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 CLDN3O15551 220 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 LILRB3O75022 631 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 CNPP09543 421 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 ZSCAN22P10073 491 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 MTHFRP42898 656 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 RBM10P98175 930 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 CACNB1Q02641 598 aaPredicted RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 XKR4Q5GH76 650 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 KIAA0319Q5VV43 1072 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 SV2BQ7L1I2 683 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 LINC00301Q8NCQ3 95 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 DDX27Q96GQ7 796 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 RIPOR3Q96MK2 946 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 PPP1R10Q96QC0 940 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 S1PR5Q9H228 398 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 ADAM7Q9H2U9 754 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 RXFP1Q9HBX9 757 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 SEL1LQ9UBV2 794 aa19.41■□□□□ 0.7
SHKBP1-204ENST00000594862 SPDYE4A6NLX3 237 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 ABLIM1O14639 778 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 HNRNPDLO14979 420 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 TRAPPC3O43617 180 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 PIGRP01833 764 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 KCNE1P15382 129 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 GAP43P17677 238 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 STAT6P42226 847 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 MATR3P43243 847 aaKnown RBP eCLIP19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 LIG4P49917 911 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 CLCN4P51793 760 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 MCL1Q07820 350 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 NAB2Q15742 525 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 SPECC1Q5M775 1068 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 ZBTB33Q86T24 672 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 HVCN1Q96D96 273 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 SNX27Q96L92 541 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 FBXL18Q96ME1 805 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 CLIC6Q96NY7 704 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 LRRC27Q9C0I9 530 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 ST6GALNAC4Q9H4F1 302 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 ZHX3Q9H4I2 956 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 FNIP2Q9P278 1114 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 TBX20Q9UMR3 447 aa19.4■□□□□ 0.7
SHKBP1-204ENST00000594862 CITO14578 2027 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 SMIM28A0A1B0GU29 152 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 C2CD2LO14523 706 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 KIF4AO95239 1232 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 GLUD1P00367 558 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 F13A1P00488 732 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 DCLRE1AQ6PJP8 1040 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 USP49Q70CQ1 688 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 KCNG4Q8TDN1 519 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 LRRC15Q8TF66 581 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 HDAC7Q8WUI4 952 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 KHSRPQ92945 711 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 FAM122AQ96E09 287 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 TSPAN18Q96SJ8 248 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 LRFN3Q9BTN0 628 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 CUEDC2Q9H467 287 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 PLEKHA5Q9HAU0 1116 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 CD320Q9NPF0 282 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 CNTN3Q9P232 1028 aa19.39■□□□□ 0.69
SHKBP1-204ENST00000594862 LOC730098B7Z3J9 87 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 PI4K2BG5E9Z4 385 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 TEX28O15482 410 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 DCXO43602 365 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 CLTAP09496 248 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 HARSP12081 509 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 EPCAMP16422 314 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 OSTNP61366 133 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 GTF2BQ00403 316 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 GLRA4Q5JXX5 417 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 ALKAL1Q6UXT8 129 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 CYP26C1Q6V0L0 522 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 MAP4K3Q8IVH8 894 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 CEP120Q8N960 986 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 RIN2Q8WYP3 895 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 TTPALQ9BTX7 342 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 GPR62Q9BZJ7 368 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 CFAP45Q9UL16 551 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 NR2E1Q9Y466 385 aa19.38■□□□□ 0.69
SHKBP1-204ENST00000594862 F8W810 466 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 CUTAO60888 179 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 RPL9P32969 192 aaKnown RBP19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 ALCAMQ13740 583 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 ATAT1Q5SQI0 421 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 C15orf39Q6ZRI6 1047 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 CMASQ8NFW8 434 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 PIK3R5Q8WYR1 880 aa19.37■□□□□ 0.69
SHKBP1-204ENST00000594862 DDX12PQ92771 950 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms