RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PRKD2Q9BZL6 878 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 CCDC113Q9H0I3 377 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 IRF2BPLQ9H1B7 796 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 FNIP2Q9P278 1114 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 IGSF9Q9P2J2 1179 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 LRWD1Q9UFC0 647 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 GDAQ9Y2T3 454 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 WDFY4Q6ZS81 3184 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 KRBA1A5PL33 1030 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 STK25O00506 426 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 N4BP3O15049 544 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 ADAM12O43184 909 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 RECQL4O94761 1208 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 THP07101 528 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 MUTP22033 750 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 NTHL1P78549 312 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 SF3A1Q15459 793 aaKnown RBP13.75□□□□□ -0.21
UPF1-203ENST00000594504 NAB2Q15742 525 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 MAPK6Q16659 721 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 NT5DC1Q5TFE4 455 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 GET4Q7L5D6 327 aaPredicted RBP13.75□□□□□ -0.21
UPF1-203ENST00000594504 DEPTORQ8TB45 409 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 LNX1Q8TBB1 728 aaPredicted RBP13.75□□□□□ -0.21
UPF1-203ENST00000594504 HDAC7Q8WUI4 952 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 RPP25Q9BUL9 199 aaKnown RBP13.75□□□□□ -0.21
UPF1-203ENST00000594504 PLEKHA4Q9H4M7 779 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.75□□□□□ -0.21
UPF1-203ENST00000594504 DPP7Q9UHL4 492 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 CA14Q9ULX7 337 aa13.75□□□□□ -0.21
UPF1-203ENST00000594504 TRIP11Q15643 1979 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 TRIOO75962 3097 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 ACKR2O00590 384 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 ZMYND10O75800 440 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 ZSCAN22P10073 491 aaPredicted RBP13.74□□□□□ -0.21
UPF1-203ENST00000594504 LAMP2P13473 410 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 AOC1P19801 751 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 CCT6AP40227 531 aaKnown RBP13.74□□□□□ -0.21
UPF1-203ENST00000594504 NAMPTP43490 491 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 IL17AQ16552 155 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 GLRA4Q5JXX5 417 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 ELMSAN1Q6PJG2 1045 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 CYP26C1Q6V0L0 522 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 GRASPQ7Z6J2 395 aaPredicted RBP13.74□□□□□ -0.21
UPF1-203ENST00000594504 STAMQ92783 540 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 TTPALQ9BTX7 342 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 C2orf40Q9H1Z8 148 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 BHMT2Q9H2M3 363 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 EPS15L1Q9UBC2 864 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 KIAA1024Q9UPX6 916 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 VWA8A3KMH1 1905 aa13.74□□□□□ -0.21
UPF1-203ENST00000594504 SF3B1O75533 1304 aaKnown RBP eCLIP13.73□□□□□ -0.21
UPF1-203ENST00000594504 VWA3AA6NCI4 1184 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 E9PMD0 336 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 PAPLNO95428 1278 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 PSMD5Q16401 504 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 KRT79Q5XKE5 535 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 FAM173BQ6P4H8 233 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 CD300LGQ6UXG3 332 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 FRMD5Q7Z6J6 570 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 GPR152Q8TDT2 470 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 SNX29Q8TEQ0 813 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 ADPGKQ9BRR6 497 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 RHOBTB2Q9BYZ6 727 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 GOLGA2P5Q9HBQ8 144 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 DDX19AQ9NUU7 478 aaKnown RBP13.73□□□□□ -0.21
UPF1-203ENST00000594504 ZDHHC7Q9NXF8 308 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 WNT16Q9UBV4 365 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 FBXW11Q9UKB1 542 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 CLIC4Q9Y696 253 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 DOCK8Q8NF50 2099 aa13.73□□□□□ -0.21
UPF1-203ENST00000594504 PP2D1A8MPX8 630 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 PROB1E7EW31 1015 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 I3L4J1 428 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 CCL16O15467 120 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 F13A1P00488 732 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 FSHRP23945 695 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 CDC25AP30304 524 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 NBL1P41271 181 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 CLCNKBP51801 687 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 PTPAQ15257 358 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 ATF7IP2Q5U623 682 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 RSPO2Q6UXX9 243 aaPredicted RBP13.72□□□□□ -0.21
UPF1-203ENST00000594504 GPR65Q8IYL9 337 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 CEP120Q8N960 986 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 DTWD2Q8NBA8 298 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 PIK3R5Q8WYR1 880 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 AK8Q96MA6 479 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 ZNF396Q96N95 335 aaPredicted RBP13.72□□□□□ -0.21
UPF1-203ENST00000594504 POLIQ9UNA4 740 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 NUMBLQ9Y6R0 609 aa13.72□□□□□ -0.21
UPF1-203ENST00000594504 MORC2Q9Y6X9 1032 aaPredicted RBP13.72□□□□□ -0.21
UPF1-203ENST00000594504 ZMYM2Q9UBW7 1377 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 CCDC169A6NNP5 214 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 ANHXE9PGG2 379 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 K7ERI5 159 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 C1RP00736 705 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 C8AP07357 584 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 OR1D2P34982 312 aa13.71□□□□□ -0.21
UPF1-203ENST00000594504 LONP1P36776 959 aaKnown RBP13.71□□□□□ -0.21
UPF1-203ENST00000594504 BRCC3P46736 316 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms