RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 KIFC3Q9BVG8 833 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 BHMT2Q9H2M3 363 aa26.36■■□□□ 1.81
LSM4-202ENST00000593564 RIF1Q5UIP0 2472 aaKnown RBP26.36■■□□□ 1.81
LSM4-202ENST00000593564 CFHP08603 1231 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 SRFP11831 508 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 CCT6AP40227 531 aaKnown RBP26.35■■□□□ 1.81
LSM4-202ENST00000593564 GNL2Q13823 731 aaKnown RBP26.35■■□□□ 1.81
LSM4-202ENST00000593564 PDXDC1Q6P996 788 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 CEP57Q86XR8 500 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 LRWD1Q9UFC0 647 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 NOL7Q9UMY1 257 aaKnown RBP26.35■■□□□ 1.81
LSM4-202ENST00000593564 VPS13AQ96RL7 3174 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 DMDP11532 3685 aa26.35■■□□□ 1.81
LSM4-202ENST00000593564 ANHXE9PGG2 379 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 HNRNPA1P09651 372 aaKnown RBP eCLIP26.34■■□□□ 1.81
LSM4-202ENST00000593564 NT5DC1Q5TFE4 455 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 LIN9Q5TKA1 542 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 ATF7IP2Q5U623 682 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 ASCL5Q7RTU5 278 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 ZSCAN31Q96LW9 406 aaPredicted RBP26.34■■□□□ 1.81
LSM4-202ENST00000593564 GDAQ9Y2T3 454 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 STK24Q9Y6E0 443 aa26.34■■□□□ 1.81
LSM4-202ENST00000593564 ZFP37Q9Y6Q3 630 aaPredicted RBP26.34■■□□□ 1.81
LSM4-202ENST00000593564 KRBA1A5PL33 1030 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 PRR23AA6NEV1 266 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 TMEM189-UBE2V1I3L0A0 370 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 HTR4Q13639 388 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 PDIA5Q14554 519 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.33■■□□□ 1.81
LSM4-202ENST00000593564 FAM184AQ8NB25 1140 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 DTWD2Q8NBA8 298 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 POLD4Q9HCU8 107 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 SH2B1Q9NRF2 756 aaPredicted RBP26.33■■□□□ 1.81
LSM4-202ENST00000593564 KIAA1024Q9UPX6 916 aa26.33■■□□□ 1.81
LSM4-202ENST00000593564 C8AP07357 584 aa26.32■■□□□ 1.8
LSM4-202ENST00000593564 FSHRP23945 695 aa26.32■■□□□ 1.8
LSM4-202ENST00000593564 HOXA9P31269 272 aa26.32■■□□□ 1.8
LSM4-202ENST00000593564 NBR1Q14596 966 aa26.32■■□□□ 1.8
LSM4-202ENST00000593564 APBB1IPQ7Z5R6 666 aaPredicted RBP26.32■■□□□ 1.8
LSM4-202ENST00000593564 PPP1R10Q96QC0 940 aaKnown RBP26.32■■□□□ 1.8
LSM4-202ENST00000593564 FAM186AA6NE01 2351 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 ADAM12O43184 909 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 FGFR3P22607 806 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 U2AF2P26368 475 aaKnown RBP eCLIP26.31■■□□□ 1.8
LSM4-202ENST00000593564 PPM1LQ5SGD2 360 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 GRASPQ7Z6J2 395 aaPredicted RBP26.31■■□□□ 1.8
LSM4-202ENST00000593564 FRMD5Q7Z6J6 570 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 IGSF22Q8N9C0 903 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 DDX19AQ9NUU7 478 aaKnown RBP26.31■■□□□ 1.8
LSM4-202ENST00000593564 CA14Q9ULX7 337 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 TNFSF13BQ9Y275 285 aa26.31■■□□□ 1.8
LSM4-202ENST00000593564 K7ERI5 159 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 POU2F2P09086 479 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 RAB33AQ14088 237 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 ANGPT1Q15389 498 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 GLRA4Q5JXX5 417 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 DCLRE1AQ6PJP8 1040 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 GPR152Q8TDT2 470 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 SNX29Q8TEQ0 813 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 UROC1Q96N76 676 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 RAB34Q9BZG1 259 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 SLC2A4RGQ9NR83 387 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 CDH7Q9ULB5 785 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 NUMBLQ9Y6R0 609 aa26.3■■□□□ 1.8
LSM4-202ENST00000593564 STK25O00506 426 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 B3GAT3O94766 335 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 RFX1P22670 979 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 PTGDRQ13258 359 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 NKD2Q969F2 451 aaPredicted RBP26.29■■□□□ 1.8
LSM4-202ENST00000593564 TBC1D17Q9HA65 648 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 MTRRQ9UBK8 725 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 PHLPP2Q6ZVD8 1323 aa26.29■■□□□ 1.8
LSM4-202ENST00000593564 VWA8A3KMH1 1905 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 XYLBO75191 536 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 NPTX2P47972 431 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 TOB1P50616 345 aaPredicted RBP26.28■■□□□ 1.8
LSM4-202ENST00000593564 CLCNKBP51801 687 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 NTHL1P78549 312 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 UPP1Q16831 310 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 UVSSAQ2YD98 709 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 AXDND1Q5T1B0 1012 aaPredicted RBP26.28■■□□□ 1.8
LSM4-202ENST00000593564 PHLDB3Q6NSJ2 640 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 CD300LGQ6UXG3 332 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 RTL10Q7L3V2 364 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 SLC7A14Q8TBB6 771 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 ARHGEF3Q9NR81 526 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 DNM3Q9UQ16 869 aa26.28■■□□□ 1.8
LSM4-202ENST00000593564 CCDC169A6NNP5 214 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 CCL16O15467 120 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 TRAPPC3O43617 180 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 IGFBP6P24592 240 aaPredicted RBP26.27■■□□□ 1.8
LSM4-202ENST00000593564 OR1D2P34982 312 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 GRM5P41594 1212 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 PEX3P56589 373 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 KIF2CQ99661 725 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 ACO2Q99798 780 aaKnown RBP26.27■■□□□ 1.8
LSM4-202ENST00000593564 CDT1Q9H211 546 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 TMEM134Q9H6X4 195 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 PTPRHQ9HD43 1115 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 TOPORSQ9NS56 1045 aaPredicted RBP26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms