RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 CXCL16Q9H2A7 254 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 NXF3Q9H4D5 531 aaKnown RBP12.26□□□□□ -0.45
VMP1-207ENST00000588131 RPF1Q9H9Y2 349 aaKnown RBP12.26□□□□□ -0.45
VMP1-207ENST00000588131 SNTG2Q9NY99 539 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 IMPACTQ9P2X3 320 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 ATP11BQ9Y2G3 1177 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 HES2Q9Y543 173 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 SQORQ9Y6N5 450 aa12.26□□□□□ -0.45
VMP1-207ENST00000588131 BRCA2P51587 3418 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 GTPBP10A4D1E9 387 aaKnown RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 LACTBL1A8MY62 500 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 DCDC2CA8MYV0 355 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 STX10O60499 249 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 N4BP1O75113 896 aaKnown RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 LRRN2O75325 713 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 PTMAP06454 111 aaKnown RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 ACTN1P12814 892 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 TNNI1P19237 187 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 PON1P27169 355 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 GTF2H1P32780 548 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 FXR1P51114 621 aaKnown RBP eCLIP12.25□□□□□ -0.45
VMP1-207ENST00000588131 DSC3Q14574 896 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 GPNMBQ14956 572 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 KYAT1Q16773 422 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 EXOC3L4Q17RC7 722 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 SLC10A6Q3KNW5 377 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 EPC2Q52LR7 807 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 SCARA3Q6AZY7 606 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 TWF2Q6IBS0 349 aaKnown RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 GBP6Q6ZN66 633 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 C15orf39Q6ZRI6 1047 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 SV2AQ7L0J3 742 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 APBB1IPQ7Z5R6 666 aaPredicted RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 USP37Q86T82 979 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 EFCAB13Q8IY85 973 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 USP38Q8NB14 1042 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 SMG8Q8ND04 991 aaKnown RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 OR5B17Q8NGF7 314 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 CPLX3Q8WVH0 158 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 ACAP3Q96P50 834 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 CCDC94Q9BW85 323 aaPredicted RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 APOL6Q9BWW8 343 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 TRIM6Q9C030 488 aaPredicted RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 TTYH3Q9C0H2 523 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 TMEM8AQ9HCN3 771 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 SIX2Q9NPC8 291 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 CHST12Q9NRB3 414 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 FAM207AQ9NSI2 230 aaPredicted RBP12.25□□□□□ -0.45
VMP1-207ENST00000588131 GCNT4Q9P109 453 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 IPPQ9Y573 584 aa12.25□□□□□ -0.45
VMP1-207ENST00000588131 TTC26A0AVF1 554 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 GOLGA6L6A8MZA4 724 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 PMM2O15305 246 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 P4HA2O15460 535 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 NBNO60934 754 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 NOL4O94818 638 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 IL18RAPO95256 599 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 C4BPAP04003 597 aaKnown RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 NFICP08651 508 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 EN2P19622 333 aaPredicted RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 AKAP5P24588 427 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 CASP14P31944 242 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 POU5F1Q01860 360 aaKnown RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 SURF1Q15526 300 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 TDRD10Q5VZ19 366 aaKnown RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 KRT39Q6A163 491 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 NECAB2Q7Z6G3 386 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 WDR49Q8IV35 697 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 TMEM130Q8N3G9 435 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 LMO3Q8TAP4 145 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 TAS1R2Q8TE23 839 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 SEMA4DQ92854 862 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 PPP1R12CQ9BZL4 782 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 INTS2Q9H0H0 1204 aaKnown RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 WNT8AQ9H1J5 351 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 GANQ9H2C0 597 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 HIPK3Q9H422 1215 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 FAM105AQ9NUU6 356 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 AJAP1Q9UKB5 411 aaPredicted RBP12.24□□□□□ -0.45
VMP1-207ENST00000588131 TBX21Q9UL17 535 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 PCDHB2Q9Y5E7 798 aa12.24□□□□□ -0.45
VMP1-207ENST00000588131 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.24□□□□□ -0.45
VMP1-207ENST00000588131 MFAP3LO75121 409 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 RECQL4O94761 1208 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 VNN1O95497 513 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 ZSCAN20P17040 1043 aaPredicted RBP12.23□□□□□ -0.45
VMP1-207ENST00000588131 CAPN2P17655 700 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 TRIM21P19474 475 aaKnown RBP12.23□□□□□ -0.45
VMP1-207ENST00000588131 ADKP55263 362 aaKnown RBP12.23□□□□□ -0.45
VMP1-207ENST00000588131 CCL23P55773 120 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 TRIM14Q14142 442 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 TCTN1Q2MV58 587 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 ZACNQ401N2 412 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 FIGNQ5HY92 759 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 JADE1Q6IE81 842 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 GJB7Q6PEY0 223 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 TRIM65Q6PJ69 517 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 UBE2Q1Q7Z7E8 422 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 PPFIBP1Q86W92 1011 aa12.23□□□□□ -0.45
VMP1-207ENST00000588131 TC2NQ8N9U0 490 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms