RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 GAP43P17677 238 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TMOD1P28289 359 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 DNM2P50570 870 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 ACLYP53396 1101 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 NKX3-2P78367 333 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 GPLD1P80108 840 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 COASYQ13057 564 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 DMP1Q13316 513 aaPredicted RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 STIM1Q13586 685 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 KCNB1Q14721 858 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TARBP2Q15633 366 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 HERC4Q5GLZ8 1057 aaPredicted RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 ODR4Q5SWX8 454 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 L1TD1Q5T7N2 865 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 EFCAB12Q6NXP0 572 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 RBM43Q6ZSC3 357 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 TRIML1Q8N9V2 468 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 PPP1R13LQ8WUF5 828 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TCP11Q8WWU5 503 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 KAT2BQ92831 832 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 KIFAP3Q92845 792 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TMEM143Q96AN5 459 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 ARMC5Q96C12 935 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 DNAJC19Q96DA6 116 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 ZNF333Q96JL9 665 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 IFT74Q96LB3 600 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 MAP7D2Q96T17 732 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 POLR3FQ9H1D9 316 aaPredicted RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 MRPL44Q9H9J2 332 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 POLD4Q9HCU8 107 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 GPRC5CQ9NQ84 441 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 STARD7Q9NQZ5 370 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 ANO10Q9NW15 660 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 TBC1D7Q9P0N9 293 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 LARSQ9P2J5 1176 aaKnown RBP5.85□□□□□ -1.47
LIG3-210ENST00000588109 TUBE1Q9UJT0 475 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 FRMPD3Q5JV73 1810 aa5.85□□□□□ -1.47
LIG3-210ENST00000588109 A0A1W2PQ45 241 aaPredicted RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 A0A1W2PQY0 241 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 CCDC169A6NNP5 214 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ZBTB42B2RXF5 422 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 K7ENM7 598 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 HAS3O00219 553 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 GAS2O43903 313 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 KLRC4O43908 158 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 RHOBTB3O94955 611 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 GCNT3O95395 438 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SGPL1O95470 568 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 C22orf31O95567 290 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ALBP02768 609 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 GJB1P08034 283 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 CYP2C9P11712 490 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PLS3P13797 630 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 KLRC1P26715 233 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SOX18P35713 384 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SARSP49591 514 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 DGKGP49619 791 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 CLCN3P51790 818 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PEX3P56589 373 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SOX10P56693 466 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 NLRP12P59046 1061 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ZNF445P59923 1031 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 KCNA1Q09470 495 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PSMD2Q13200 908 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ITGA7Q13683 1181 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 MORC3Q14149 939 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 TFDP1Q14186 410 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PPP2R5AQ15172 486 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 DPCR1Q3MIW9 517 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ANO6Q4KMQ2 910 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 FAM26FQ5R3K3 315 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 NT5DC1Q5TFE4 455 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ZNF658Q5TYW1 1059 aaPredicted RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 CCSAPQ6IQ19 270 aaPredicted RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 NFRKBQ6P4R8 1299 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 MTHFD1LQ6UB35 978 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 LRSAM1Q6UWE0 723 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 LINC00114Q6XXX2 140 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 STXBP4Q6ZWJ1 553 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SFR1Q86XK3 245 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 RHPN2Q8IUC4 686 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 FAM178BQ8IXR5 827 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SMYD4Q8IYR2 804 aaPredicted RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 LRRC71Q8N4P6 559 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 OR13H1Q8NG92 308 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SPATA20Q8TB22 786 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 DEPTORQ8TB45 409 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 U2AF1L4Q8WU68 220 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 LMBR1Q8WVP7 490 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PSPC1Q8WXF1 523 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 HPS3Q969F9 1004 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 ZBTB10Q96DT7 871 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SCLT1Q96NL6 688 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 NSUN5Q96P11 429 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 MDFIQ99750 246 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 PLVAPQ9BX97 442 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 GTPBP4Q9BZE4 634 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 MCOLN1Q9GZU1 580 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 NAT10Q9H0A0 1025 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 FAM49AQ9H0Q0 323 aaPredicted RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms