RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 GLRA4Q5JXX5 417 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 CEP135Q66GS9 1140 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 GLB1LQ6UWU2 654 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 ZC3H3Q8IXZ2 948 aaKnown RBP11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 FAM212AQ96EL1 285 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 ZMAT2Q96NC0 199 aaKnown RBP11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 YME1L1Q96TA2 773 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 RAD9AQ99638 391 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 TSG101Q99816 390 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 PBX4Q9BYU1 374 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 GZF1Q9H116 711 aaPredicted RBP11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 DNAJC25Q9H1X3 360 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 UBN1Q9NPG3 1134 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 TBC1D13Q9NVG8 400 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 ANO10Q9NW15 660 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 RWDD2AQ9UIY3 292 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 YBX2Q9Y2T7 364 aaKnown RBP11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 INSL6Q9Y581 213 aa11.65□□□□□ -0.54
SMARCA4-213ENST00000587988 SMIM28A0A1B0GU29 152 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 BICDL2A1A5D9 508 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 ZNF233A6NK53 670 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 B4GALT3O60512 393 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 AKAP3O75969 853 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 DDHD2O94830 711 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 FKBP3Q00688 224 aaKnown RBP11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 MYBPC2Q14324 1141 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 SNRNP35Q16560 246 aaKnown RBP11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 KYAT1Q16773 422 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 ZNF280BQ86YH2 543 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 BRSK2Q8IWQ3 736 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 ABI1Q8IZP0 508 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 PLEKHO2Q8TD55 490 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 SP7Q8TDD2 431 aaPredicted RBP11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 FAM84AQ96KN4 292 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 MFSD14AQ96MC6 490 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 RPS6KC1Q96S38 1066 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 CWH43Q9H720 699 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 KIAA1586Q9HCI6 787 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 PDE11AQ9HCR9 933 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 RBAKQ9NYW8 714 aaPredicted RBP11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 CNTN3Q9P232 1028 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 DACH1Q9UI36 760 aa11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 TDRD15B5MCY1 1934 aaKnown RBP11.64□□□□□ -0.55
SMARCA4-213ENST00000587988 PDCD11Q14690 1871 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 RALGAPA2Q2PPJ7 1873 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 A0A1W2PPC1 479 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 TULP1O00294 542 aaPredicted RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 CETN3O15182 167 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 LINC00271P0C7V0 271 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 CCDC192P0DO97 292 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 RPL13P26373 211 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 ERCC5P28715 1186 aaPredicted RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 POU5F1Q01860 360 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 PPP2R3AQ06190 1150 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 CYP24A1Q07973 514 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 BTG3Q14201 252 aaPredicted RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 NAB2Q15742 525 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 ANO6Q4KMQ2 910 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 LMBRD2Q68DH5 695 aaPredicted RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 JADE1Q6IE81 842 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 FOXR2Q6PJQ5 311 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 SPRED2Q7Z698 418 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 EFCAB13Q8IY85 973 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 CMTR2Q8IYT2 770 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 URGCPQ8TCY9 931 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 PPP1R10Q96QC0 940 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 POP1Q99575 1024 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 SRRTQ9BXP5 876 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 NKX2-4Q9H2Z4 354 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 NRDE2Q9H7Z3 1164 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 PLEKHA5Q9HAU0 1116 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 TOPORSQ9NS56 1045 aaPredicted RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 CACNG4Q9UBN1 327 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 FRMD4BQ9Y2L6 1034 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 PCDHA11Q9Y5I1 949 aa11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 MRPL42Q9Y6G3 142 aaKnown RBP11.63□□□□□ -0.55
SMARCA4-213ENST00000587988 LINC01553A4QN01 128 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 SOX1O00570 391 aaPredicted RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 THP07101 528 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 CA3P07451 260 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 NFICP08651 508 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 KCNE1P15382 129 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 IGFBP6P24592 240 aaPredicted RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 PSMC2P35998 433 aaKnown RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 GUCY2FP51841 1108 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 SOX4Q06945 474 aaPredicted RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 GRIK3Q13003 919 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 PSMD6Q15008 389 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 ZBTB6Q15916 424 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 LRIT3Q3SXY7 679 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 CT47A1Q5JQC4 288 aaPredicted RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 SCARA3Q6AZY7 606 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 FILIP1Q7Z7B0 1213 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 FAM186BQ8IYM0 893 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 LRRC43Q8N309 656 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 FIBCD1Q8N539 461 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 CSGALNACT2Q8N6G5 542 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 C18orf25Q96B23 403 aaPredicted RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 CCDC127Q96BQ5 260 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 KIF12Q96FN5 646 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms