RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 KIF5AQ12840 1032 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 RAPGEF1Q13905 1077 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 PSMD6Q15008 389 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 TMEM63BQ5T3F8 832 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 SLC39A4Q6P5W5 647 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 SYT10Q6XYQ8 523 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 IFNLR1Q8IU57 520 aaPredicted RBP11.25□□□□□ -0.61
LIG3-203ENST00000585370 FAM126BQ8IXS8 530 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 ACRBPQ8NEB7 543 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 MAFAQ8NHW3 353 aaPredicted RBP11.25□□□□□ -0.61
LIG3-203ENST00000585370 ZNF592Q92610 1267 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIG3-203ENST00000585370 C16orf70Q9BSU1 422 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 RNPEPQ9H4A4 650 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 ARHGAP20Q9P2F6 1191 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 APEX2Q9UBZ4 518 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 DNAI1Q9UI46 699 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 MROH7Q68CQ1 1323 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 XIRP2A4UGR9 3374 aa11.25□□□□□ -0.61
LIG3-203ENST00000585370 TISP43B9A030 160 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 ACKR2O00590 384 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CLDN3O15551 220 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 DYNC1LI2O43237 492 aaPredicted RBP11.24□□□□□ -0.61
LIG3-203ENST00000585370 C22orf31O95567 290 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CD4P01730 458 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 MMP3P08254 477 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TRIM49P0CI25 452 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TRIM49CP0CI26 452 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 ACTN1P12814 892 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CSF2RAP15509 400 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 KLRC1P26715 233 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 GTF2F1P35269 517 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIG3-203ENST00000585370 SOX5P35711 763 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 PHKA2P46019 1235 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CPT1AP50416 773 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 MKRN4PQ13434 485 aaPredicted RBP11.24□□□□□ -0.61
LIG3-203ENST00000585370 GRIN2CQ14957 1233 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 KYAT1Q16773 422 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 FAM187BQ17R55 369 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 ASTE1Q2TB18 679 aaPredicted RBP11.24□□□□□ -0.61
LIG3-203ENST00000585370 CBWD6Q4V339 395 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 EPC2Q52LR7 807 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TDRD12Q587J7 1177 aaKnown RBP11.24□□□□□ -0.61
LIG3-203ENST00000585370 CBWD3Q5JTY5 395 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CBWD5Q5RIA9 395 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TMEM240Q5SV17 173 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 HGSNATQ68CP4 663 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CXCL17Q6UXB2 119 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 ENOSF1Q7L5Y1 443 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 IRF2BP2Q7Z5L9 587 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TRIM50Q86XT4 487 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CBWD2Q8IUF1 395 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 SLC43A3Q8NBI5 491 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 RNF149Q8NC42 400 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 LMO3Q8TAP4 145 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 FNBP1Q96RU3 617 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 MSTO1Q9BUK6 570 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 CCDC113Q9H0I3 377 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 AP5M1Q9H0R1 490 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 FZD8Q9H461 694 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 PRMT7Q9NVM4 692 aaPredicted RBP11.24□□□□□ -0.61
LIG3-203ENST00000585370 DNAJC12Q9UKB3 198 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 PCDHA13Q9Y5I0 950 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 FHOD1Q9Y613 1164 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 GRIN2DO15399 1336 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 ATP8B3O60423 1300 aa11.24□□□□□ -0.61
LIG3-203ENST00000585370 TMEM265A0A087WTH1 108 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 GOLGA8IPA6NC78 632 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 GOLGA8JA6NMD2 632 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 GRXCR1A8MXD5 290 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 PJA2O43164 708 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 PRKCBP05771 671 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 ADRB2P07550 413 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 SRGAP2CP0DJJ0 459 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 ACRP10323 421 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 DNAJB2P25686 324 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 ARHGAP25P42331 645 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 MATR3P43243 847 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG3-203ENST00000585370 MAGEA1P43355 309 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 GPC3P51654 580 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 MFAP3P55082 362 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 PPP3CAQ08209 521 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 PPFIA1Q13136 1202 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 PPIGQ13427 754 aaKnown RBP eCLIP11.23□□□□□ -0.613e-7■□□□□ 11.3
LIG3-203ENST00000585370 PCBP1Q15365 356 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG3-203ENST00000585370 FSCN1Q16658 493 aaKnown RBP11.23□□□□□ -0.61
LIG3-203ENST00000585370 C1orf220Q5T0J3 134 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 CCDC122Q5T0U0 273 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 RASIP1Q5U651 963 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 IQCEQ6IPM2 695 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 MTHFD1LQ6UB35 978 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 TSHZ1Q6ZSZ6 1077 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 TLK2Q86UE8 772 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 RHPN2Q8IUC4 686 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 RNF10Q8N5U6 811 aaKnown RBP11.23□□□□□ -0.61
LIG3-203ENST00000585370 METTL13Q8N6R0 699 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 LINC01465Q8N7H1 131 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 FBXL13Q8NEE6 735 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 JAKMIP2Q96AA8 810 aa11.23□□□□□ -0.61
LIG3-203ENST00000585370 SAAL1Q96ER3 474 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms