RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	DMRTA2	Q96SC8	542 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	ADI1	Q9BV57	179 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	XYLT2	Q9H1B5	865 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	ZNF287	Q9HBT7	754 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	CPNE7	Q9UBL6	633 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	SCOC	Q9UIL1	159 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	ASB1	Q9Y576	335 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595	PMF1-BGLAP	U3KQ54	211 aa		5.78	□□□□□ -1.48
SS18-223	ENST00000583595		A0A1B0GVC2	190 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	OTOL1	A6NHN0	477 aa	Predicted RBP	5.77	□□□□□ -1.49
SS18-223	ENST00000583595	EXOC5	O00471	708 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	APOL1	O14791	398 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	FFAR2	O15552	330 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	SGSM2	O43147	1006 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	TIMM44	O43615	452 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	MAFK	O60675	156 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ZBTB7A	O95365	584 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	PLA2G1B	P04054	148 aa	Known RBP	5.77	□□□□□ -1.49
SS18-223	ENST00000583595	DHRS4L1	P0CG22	281 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	MC4R	P32245	332 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	CAP1	Q01518	475 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	GALNT1	Q10472	559 aa	Predicted RBP	5.77	□□□□□ -1.49
SS18-223	ENST00000583595	PMS2P11	Q13670	270 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	PLS1	Q14651	629 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	POSTN	Q15063	836 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	NOMO1	Q15155	1222 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	TAF5	Q15542	800 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	CNGA2	Q16280	664 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	MPEG1	Q2M385	716 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ARL13B	Q3SXY8	428 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	SLFN12L	Q6IEE8	588 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	KRTAP5-3	Q6L8H2	238 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ZNF280D	Q6N043	979 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	CFAP161	Q6P656	301 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	KLHDC10	Q6PID8	442 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	RSRC2	Q7L4I2	434 aa	Known RBP	5.77	□□□□□ -1.49
SS18-223	ENST00000583595	B3GNT8	Q7Z7M8	397 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	TTC7B	Q86TV6	843 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ANKRD18A	Q8IVF6	992 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	SP8	Q8IXZ3	490 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	DRC7	Q8IY82	874 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ZDHHC14	Q8IZN3	488 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ATG16L2	Q8NAA4	619 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	ARRDC4	Q8NCT1	418 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	GAB3	Q8WWW8	586 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	SORBS1	Q9BX66	1292 aa	Known RBP	5.77	□□□□□ -1.49
SS18-223	ENST00000583595	BTBD7	Q9P203	1132 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	OGDHL	Q9ULD0	1010 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	PADI4	Q9UM07	663 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595	CRYL1	Q9Y2S2	319 aa		5.77	□□□□□ -1.49
SS18-223	ENST00000583595		A0A1W2PPL8	197 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	TCRBV5S2	A0A599	114 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595		B8ZZF3	427 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	PRRG2	O14669	202 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	NCAM2	O15394	837 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	PHGDH	O43175	533 aa	Known RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	IL18RAP	O95256	599 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	PARP1	P09874	1014 aa	Known RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SLC7A1	P30825	629 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	IL12RB1	P42701	662 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	HK3	P52790	923 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SUMO3	P55854	103 aa	Predicted RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	HERVK_113	P62684	666 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	DAG1	Q14118	895 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SEPT2	Q15019	361 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	TOMM20	Q15388	145 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	KHDC1	Q4VXA5	237 aa	Known RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	VWA3B	Q502W6	1294 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CCDC93	Q567U6	631 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CYP4F22	Q6NT55	531 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	BTNL9	Q6UXG8	535 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	MILR1	Q7Z6M3	343 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	TRIM48	Q8IWZ4	208 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	RHOT1	Q8IXI2	618 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	NAXE	Q8NCW5	288 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CPA5	Q8WXQ8	436 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SLC35A4	Q96G79	324 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CLPTM1L	Q96KA5	538 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	PPM1M	Q96MI6	270 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	VRK1	Q99986	396 aa	Predicted RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	GREM2	Q9H772	168 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SMC4	Q9NTJ3	1288 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	IFT80	Q9P2H3	777 aa	Predicted RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CPA4	Q9UI42	421 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	FBXO2	Q9UK22	296 aa	Predicted RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	DENND2A	Q9ULE3	1009 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	SYNPO2	Q9UMS6	1093 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CEP83	Q9Y592	693 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	PCDHB4	Q9Y5E5	795 aa		5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CFAP20	Q9Y6A4	193 aa	Known RBP	5.76	□□□□□ -1.49
SS18-223	ENST00000583595	CC2D2A	Q9P2K1	1620 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595		A0A1B0GTL3	188 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	RRN3P2	A6NIE6	340 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	CCER2	I3L3R5	266 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	MYO1F	O00160	1098 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	EIF3F	O00303	357 aa	Predicted RBP	5.75	□□□□□ -1.49
SS18-223	ENST00000583595	FRS3	O43559	492 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	PLA2G6	O60733	806 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	TH	P07101	528 aa		5.75	□□□□□ -1.49
SS18-223	ENST00000583595	RPL17	P18621	184 aa	Known RBP	5.75	□□□□□ -1.49

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