RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PPP3CAQ08209 521 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 FAAP100Q0VG06 881 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 NFX1Q12986 1120 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 DSC3Q14574 896 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 ARID5BQ14865 1188 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 ZACNQ401N2 412 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 ZBTB41Q5SVQ8 909 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 TWF2Q6IBS0 349 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 MRPL10Q7Z7H8 261 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 ZNF397Q8NF99 534 aaPredicted RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 NEK11Q8NG66 645 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 RSPH1Q8WYR4 309 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 PAWRQ96IZ0 340 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 PCMTD1Q96MG8 357 aaPredicted RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 TMEM117Q9H0C3 514 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 AGO3Q9H9G7 860 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 PDE11AQ9HCR9 933 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 MYO6Q9UM54 1294 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 CAPN11Q9UMQ6 739 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 A0A0U1RQF3 1178 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 C4BPAP04003 597 aaKnown RBP16.53■□□□□ 0.24
SS18-215ENST00000580642 DLATP10515 647 aaKnown RBP16.53■□□□□ 0.24
SS18-215ENST00000580642 GHRP10912 638 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 PON1P27169 355 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 TNFSF9P41273 254 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 KCNMA1Q12791 1236 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 TRIM60Q495X7 471 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 CBWD6Q4V339 395 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 EPC2Q52LR7 807 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 XKR4Q5GH76 650 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 CBWD3Q5JTY5 395 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 CBWD5Q5RIA9 395 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 SV2AQ7L0J3 742 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 UBE2Q1Q7Z7E8 422 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 EHBP1Q8NDI1 1231 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 FBXL13Q8NEE6 735 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 PGBD4Q96DM1 585 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 TTYH3Q9C0H2 523 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 HIPK3Q9H422 1215 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 MMRN2Q9H8L6 949 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 C1orf112Q9NSG2 853 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 GCNT4Q9P109 453 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 CEP72Q9P209 647 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 TBX21Q9UL17 535 aa16.53■□□□□ 0.24
SS18-215ENST00000580642 CENPFP49454 3210 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 AKR1B15C9JRZ8 316 aaPredicted RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 XPOTO43592 962 aaKnown RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 NRDCO43847 1150 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 TNNC2P02585 160 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 CXCL10P02778 98 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 CD52P31358 61 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 GCLMP48507 274 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 ATN1P54259 1190 aaPredicted RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 ZBED6P86452 979 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 SLC10A6Q3KNW5 377 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 ALKAL1Q6UXT8 129 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 CDR2LQ86X02 465 aaPredicted RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 CEP120Q8N960 986 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 SPC24Q8NBT2 197 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 CCDC112Q8NEF3 446 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 SEPT8Q92599 483 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 ANKRD36BP1Q96IX9 119 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 PANX2Q96RD6 677 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 EIF2AQ9BY44 585 aaKnown RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 IFIH1Q9BYX4 1025 aaKnown RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 RGS18Q9NS28 235 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 FAM105AQ9NUU6 356 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 RAB20Q9NX57 234 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 CNTN3Q9P232 1028 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 GIT1Q9Y2X7 761 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 LUC7L2Q9Y383 392 aaKnown RBP16.52■□□□□ 0.24
SS18-215ENST00000580642 IPPQ9Y573 584 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 PCDHB2Q9Y5E7 798 aa16.52■□□□□ 0.24
SS18-215ENST00000580642 EOMESO95936 686 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 GYPCP04921 128 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 CLTBP09497 229 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 CXCL8P10145 99 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 KCNE1P15382 129 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 MBTPS1Q14703 1052 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 TSR1Q2NL82 804 aaKnown RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 PLEKHG4Q58EX7 1191 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 KLHDC7AQ5VTJ3 777 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 TRIM65Q6PJ69 517 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 ENOSF1Q7L5Y1 443 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 CCDC186Q7Z3E2 898 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 DIS3LQ8TF46 1054 aaKnown RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 TAF4BQ92750 862 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 SYN2Q92777 582 aaPredicted RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 JAKMIP2Q96AA8 810 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 TRIM44Q96DX7 344 aaPredicted RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 SNX27Q96L92 541 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 INTS2Q9H0H0 1204 aaKnown RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 TMX1Q9H3N1 280 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 FAM124BQ9H5Z6 455 aaPredicted RBP16.51■□□□□ 0.23
SS18-215ENST00000580642 APEX2Q9UBZ4 518 aa16.51■□□□□ 0.23
SS18-215ENST00000580642 LACTBL1A8MY62 500 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 KIAA0355O15063 1070 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 MFAP3LO75121 409 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 TMEM191BP0C7N4 346 aa16.5■□□□□ 0.23
SS18-215ENST00000580642 CYP3A5P20815 502 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms