RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TDP1Q9NUW8 608 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 PCDHA13Q9Y5I0 950 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 ACTL7AQ9Y615 435 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 MYBBP1AQ9BQG0 1328 aaKnown RBP8.36□□□□□ -1.07
SS18-214ENST00000580003 CCDC154A6NI56 674 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 HTRA2O43464 458 aaPredicted RBP8.36□□□□□ -1.07
SS18-214ENST00000580003 TACR2P21452 398 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 APOBEC3AP31941 199 aaPredicted RBP8.36□□□□□ -1.07
SS18-214ENST00000580003 ZXDAP98168 799 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 TUBA3CQ13748 450 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 ATP2B3Q16720 1220 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 TUBA3EQ6PEY2 450 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 CRIP3Q6Q6R5 217 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 DRC7Q8IY82 874 aa8.36□□□□□ -1.07
SS18-214ENST00000580003 DCLRE1CQ96SD1 692 aaKnown RBP8.36□□□□□ -1.07
SS18-214ENST00000580003 LUC7L2Q9Y383 392 aaKnown RBP8.36□□□□□ -1.07
SS18-214ENST00000580003 ALDH1L1O75891 902 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 PEX11BO96011 259 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 RPLP2P05387 115 aaKnown RBP8.35□□□□□ -1.07
SS18-214ENST00000580003 C6P13671 934 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 DDCP20711 480 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 FPR1P21462 350 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 NHLH2Q02577 135 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 OTUD7BQ6GQQ9 843 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 STAG1Q8WVM7 1258 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 LIMCH1Q9UPQ0 1083 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 IPPQ9Y573 584 aa8.35□□□□□ -1.07
SS18-214ENST00000580003 GRXCR1A8MXD5 290 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 WNT10BO00744 389 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 POMCP01189 267 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 AMY1AP04745 511 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 PCSK1P29120 753 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 CDC42EP1Q00587 391 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 CREMQ03060 361 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 MTM1Q13496 603 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 CSRP2Q16527 193 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 TMEM240Q5SV17 173 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 USP51Q70EK9 711 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 ZNF276Q8N554 614 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 ZGPATQ8N5A5 531 aaKnown RBP8.34□□□□□ -1.07
SS18-214ENST00000580003 TMX3Q96JJ7 454 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 PHACTR3Q96KR7 559 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 KRTAP4-9Q9BYQ8 210 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 TRPM5Q9NZQ8 1165 aa8.34□□□□□ -1.07
SS18-214ENST00000580003 RUVBL1Q9Y265 456 aaKnown RBP8.34□□□□□ -1.07
SS18-214ENST00000580003 REXO2Q9Y3B8 237 aaKnown RBP8.34□□□□□ -1.07
SS18-214ENST00000580003 DIRC3C9JPN6 131 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 NPIPB8E9PQR5 432 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 LEFTY2O00292 366 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 RNASE9P60153 205 aaKnown RBP8.33□□□□□ -1.08
SS18-214ENST00000580003 SLC25A3Q00325 362 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 IL10RAQ13651 578 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 C3orf36Q3SXR2 165 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 ZNF529Q6P280 563 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 SEM1Q6ZVN7 128 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 CMTR2Q8IYT2 770 aaKnown RBP8.33□□□□□ -1.08
SS18-214ENST00000580003 CPA6Q8N4T0 437 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 SLC25A43Q8WUT9 341 aaPredicted RBP8.33□□□□□ -1.08
SS18-214ENST00000580003 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.33□□□□□ -1.08
SS18-214ENST00000580003 SERPINB13Q9UIV8 391 aa8.33□□□□□ -1.08
SS18-214ENST00000580003 DRGXA6NNA5 263 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 SGTAO43765 313 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 FZD7O75084 574 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 ZNF202O95125 648 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 IL33O95760 270 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 SPATA31D3P0C874 917 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 EDNRBP24530 442 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 ATP8B2P98198 1209 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 LCE5AQ5TCM9 118 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 SPATA31D4Q6ZUB0 917 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 GDF7Q7Z4P5 450 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 SYT12Q8IV01 421 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 RAB24Q969Q5 203 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 HOOK2Q96ED9 719 aa8.32□□□□□ -1.08
SS18-214ENST00000580003 REXO4Q9GZR2 422 aaKnown RBP8.32□□□□□ -1.08
SS18-214ENST00000580003 CFAP20Q9Y6A4 193 aaKnown RBP8.32□□□□□ -1.08
SS18-214ENST00000580003 PNPLA7Q6ZV29 1317 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 ZRANB2O95218 330 aaKnown RBP eCLIP8.31□□□□□ -1.08
SS18-214ENST00000580003 ALAS1P13196 640 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 VCAM1P19320 739 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 PTGS2P35354 604 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 CHN2P52757 468 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 CTXN1P60606 82 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 TARDBPQ13148 414 aaKnown RBP eCLIP8.31□□□□□ -1.08
SS18-214ENST00000580003 UBXN2BQ14CS0 331 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 TTF1Q15361 905 aaPredicted RBP8.31□□□□□ -1.08
SS18-214ENST00000580003 GADL1Q6ZQY3 521 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 MED25Q71SY5 747 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 SYNE4Q8N205 404 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 ZNF483Q8TF39 744 aaPredicted RBP8.31□□□□□ -1.08
SS18-214ENST00000580003 KAT5Q92993 513 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 HSPBAP1Q96EW2 488 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 MYOCQ99972 504 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 SLC46A2Q9BY10 475 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 IP6K2Q9UHH9 426 aa8.31□□□□□ -1.08
SS18-214ENST00000580003 DTNBO60941 627 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 PPFIA4O75335 1185 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 RPS6KA4O75676 772 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 CT47B1P0C2W7 299 aaPredicted RBP8.3□□□□□ -1.08
SS18-214ENST00000580003 GDF5P43026 501 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms