RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NDC1Q9BTX1 674 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 MRI1Q9BV20 369 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 KRTAP4-9Q9BYQ8 210 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 SPON1Q9HCB6 807 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 AASDHPPTQ9NRN7 309 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 TMEM140Q9NV12 185 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 MOCS1Q9NZB8 636 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 THRAP3Q9Y2W1 955 aaKnown RBP6.99□□□□□ -1.29
NUP88-213ENST00000576862 MYBBP1AQ9BQG0 1328 aaKnown RBP6.99□□□□□ -1.29
NUP88-213ENST00000576862 LEFTY2O00292 366 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 ABLIM3O94929 683 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 AMHP03971 560 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 SNRPA1P09661 255 aaKnown RBP6.98□□□□□ -1.29
NUP88-213ENST00000576862 RAP2AP10114 183 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 DDCP20711 480 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 PTH1RQ03431 593 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 OR10H5Q8NGA6 315 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 KAT5Q92993 513 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 ZNF747Q9BV97 191 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 CLCA2Q9UQC9 943 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 PCDHB1Q9Y5F3 818 aa6.98□□□□□ -1.29
NUP88-213ENST00000576862 APOBEC3AP31941 199 aaPredicted RBP6.97□□□□□ -1.29
NUP88-213ENST00000576862 CDC42EP1Q00587 391 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 RABL3Q5HYI8 236 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 RRP12Q5JTH9 1297 aaKnown RBP6.97□□□□□ -1.29
NUP88-213ENST00000576862 LCE5AQ5TCM9 118 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 METRNLQ641Q3 311 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 EFCAB12Q6NXP0 572 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 DBX2Q6ZNG2 339 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 RAVER1Q8IY67 606 aaKnown RBP6.97□□□□□ -1.29
NUP88-213ENST00000576862 MIER2Q8N344 545 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 DCBLD1Q8N8Z6 715 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 IFI44Q8TCB0 444 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 HSPBAP1Q96EW2 488 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 PLEKHG4BQ96PX9 1271 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 DMRTA2Q96SC8 542 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 IP6K2Q9UHH9 426 aa6.97□□□□□ -1.29
NUP88-213ENST00000576862 AHRRA9YTQ3 701 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 AKAP10O43572 662 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 SGTAO43765 313 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 FAM20BO75063 409 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 ATP5JP18859 108 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 FXR1P51114 621 aaKnown RBP eCLIP6.96□□□□□ -1.3
NUP88-213ENST00000576862 RAB27AP51159 221 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 RAP2BP61225 183 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 DSC2Q02487 901 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 PIN1Q13526 163 aaPredicted RBP6.96□□□□□ -1.3
NUP88-213ENST00000576862 ATXN7L2Q5T6C5 722 aaPredicted RBP6.96□□□□□ -1.3
NUP88-213ENST00000576862 SEM1Q6ZVN7 128 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 ZFP28Q8NHY6 868 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 MRGPRX4Q96LA9 322 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 NEU1Q99519 415 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 RTFDC1Q9BY42 306 aaPredicted RBP6.96□□□□□ -1.3
NUP88-213ENST00000576862 RHOBTB2Q9BYZ6 727 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 CSRNP2Q9H175 543 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 VPS11Q9H270 941 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 TDP1Q9NUW8 608 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 PARPBPQ9NWS1 579 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.96□□□□□ -1.3
NUP88-213ENST00000576862 SORCS3Q9UPU3 1222 aa6.96□□□□□ -1.3
NUP88-213ENST00000576862 RUVBL1Q9Y265 456 aaKnown RBP6.96□□□□□ -1.3
NUP88-213ENST00000576862 DRGXA6NNA5 263 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 IL33O95760 270 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 PDCP20941 246 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 CTXN1P60606 82 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 NHLH2Q02577 135 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 CRIP3Q6Q6R5 217 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 PLXDC1Q8IUK5 500 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 ANKRD13AQ8IZ07 590 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 Q8N1X5 172 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 PRR18Q8N4B5 295 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 TMX3Q96JJ7 454 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 FBXO34Q9NWN3 711 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 FAM30AQ9NZY2 134 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 POGKQ9P215 609 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 CHST2Q9Y4C5 530 aa6.95□□□□□ -1.3
NUP88-213ENST00000576862 TRIM24O15164 1050 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 TEX33O43247 280 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 POU2F2P09086 479 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 PF4V1P10720 104 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 NR4A1P22736 598 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 MGAT1P26572 445 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 CHN2P52757 468 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 EPHB1P54762 984 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 ODR4Q5SWX8 454 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 FAM102AQ5T9C2 384 aaPredicted RBP6.94□□□□□ -1.3
NUP88-213ENST00000576862 FNDC7Q5VTL7 733 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 IGFL4Q6B9Z1 124 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 ZNF529Q6P280 563 aa6.94□□□□□ -1.3
NUP88-213ENST00000576862 NSUN6Q8TEA1 469 aaKnown RBP6.94□□□□□ -1.3
NUP88-213ENST00000576862 ZNF768Q9H5H4 540 aaKnown RBP6.94□□□□□ -1.3
NUP88-213ENST00000576862 CFAP20Q9Y6A4 193 aaKnown RBP6.94□□□□□ -1.3
NUP88-213ENST00000576862 ZNF185O15231 689 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 SCAF4O95104 1147 aaKnown RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 ZSCAN20P17040 1043 aaPredicted RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 ZFP36P26651 326 aaKnown RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 ZNF280AP59817 542 aaPredicted RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 RNASE9P60153 205 aaKnown RBP6.93□□□□□ -1.3
NUP88-213ENST00000576862 FAM189BP81408 668 aa6.93□□□□□ -1.3
NUP88-213ENST00000576862 UBXN2BQ14CS0 331 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms